Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05166 ATGGGATTCATTAGCGGCATCATCTTTGGTATTGTGATTGGTATGATATTGATCGTCGCTTTCGCTCGACAAGAAAGCACTCGATCCAAACGTCGCACCGATTTGGCGAAGACGATAGCAAAATTTGCGAGGTTGACGGTGGAGGATTCTAGAAAACTTCTACCTCCAAATTTTTATCCATCATGGGTGTTAAATTGGCTTAATAGTCAATTAGAAAAGATTTGGCCTTTTGTCGATGAGGCAGCATCAGAATTGATAAAAAACAATGTTGAACCCATTCTTGAACAATATAGACCGGTGATTTTGTCGTCTCTCACATTTTCCAAATTAACACTTGGTACTGTTGCTCCACAATTTACAGGAATTTCAATTGTTGAAGAGGGTAGTGGGCCTAATGGAGTGACAATGGAGTTTGACATGCAGTGGGATGGTAACCCTAATATTGTTCTTGACATTAAAACCAAAGTTGGTGTTGTATTGCCTGTGCAGGTAAAAAATATTGGATTCACTGGGGTTTTCAGGTTGATCTTCAAACCTCTAGTAAATGAATTCCCTGCTTTTGGAGCTGTTTTATTTTCTCTAAGAGAAAAGAAAGCTCTTGATTTTACTCTTAAAGTTATTGGTGGTGATATTTCAGCTTTACCAGGGGTATCTGATGCTATAGAGGAAACAATTCGAGATGCCATTGAAGACTCTATAACTTGGCCAGTACGCAAAATTATACCAATTATACCAGGAGATTATAGTAACCTGGAACTGAAACCTGTTGGAACACTAGATGTAAAACTAGTGCAAGCAAAGAACTTATCAAATAAAGATTTAATTGGGAAATCTGATCCTTTTGCTGTCGTATTTGTACGCCCACTTCGTGACAAAACCAAAACTAGTAAAACAATCAATAATCAGTTGAATCCAATATGGAATGAGCACTTTGAATTCATCATTGAAGATGTATCAACACAACACTTGACCATAAGAATATTTGATGATGAAGGAGTTCAAGCAGCTGAGCTTATTGGTTGTGCCCAAGTTTCCCTAAAGGACCTTGAACCTGGTAAAGTGAAGGATGTATGGTTGAAATTAGTTAAGGATTTAGAGGTCCATAGAGATAACAAACCTAGGGGTGAGGTGCATTTGGAGCTCTTGTATTGTCCATATGGAGTTGAACACACTTTTAAGAGCCCTTTTGACGCCGATTACTCATTAACCACATTCGAAAAGACTCTCAAGAGCGACGCAGAGGAAGATGATATTTTAGCATCATCATCGCGGAGGAAAAGCAATGTAATTGTAAGAGGAGTTCTATCGGTCACTGTAATTTCAGCTGAAGACTTACCAGTGGTGGATTTAATGGGCAAGGCTGACCCGTTTGTTGTCCTTGCATTGAAAAAATCGGAAAAAAAATACAAGACAAGAGTTGTAAATGAAAGTTTGAATCCAGTTTGGAATCAAACATTTGACTTCGTTGTGGAGGATGGCTTACACGACATGTTAATTATTGAACTTTGGGATCATGATACATTTGGCAAGGAAAAAATGGGTAAAGTGATCATGACACTAACCAAAGTCATCTTAGAAGGGGAATATGACGAAACATTTGTTTTGGATGATGCTAAATCCGGAAAGATTAATTTGCATTTAAGATGGACTGCACAACACAAATACCGTGAACCTTAA 1677 0.381 MGFISGIIFGIVIGMILIVAFARQESTRSKRRTDLAKTIAKFARLTVEDSRKLLPPNFYPSWVLNWLNSQLEKIWPFVDEAASELIKNNVEPILEQYRPVILSSLTFSKLTLGTVAPQFTGISIVEEGSGPNGVTMEFDMQWDGNPNIVLDIKTKVGVVLPVQVKNIGFTGVFRLIFKPLVNEFPAFGAVLFSLREKKALDFTLKVIGGDISALPGVSDAIEETIRDAIEDSITWPVRKIIPIIPGDYSNLELKPVGTLDVKLVQAKNLSNKDLIGKSDPFAVVFVRPLRDKTKTSKTINNQLNPIWNEHFEFIIEDVSTQHLTIRIFDDEGVQAAELIGCAQVSLKDLEPGKVKDVWLKLVKDLEVHRDNKPRGEVHLELLYCPYGVEHTFKSPFDADYSLTTFEKTLKSDAEEDDILASSSRRKSNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLALKKSEKKYKTRVVNESLNPVWNQTFDFVVEDGLHDMLIIELWDHDTFGKEKMGKVIMTLTKVILEGEYDETFVLDDAKSGKINLHLRWTAQHKYREP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05166 558 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Trre5g05166 558 Gene3D C2 domain 249 385 IPR035892 -
Trre5g05166 558 Pfam C2 domain 433 533 IPR000008 -
Trre5g05166 558 Pfam C2 domain 257 361 IPR000008 -
Trre5g05166 558 ProSiteProfiles C2 domain profile. 238 359 IPR000008 -
Trre5g05166 558 CDD SMP_SYT 60 243 - -
Trre5g05166 558 CDD C2 435 531 - -
Trre5g05166 558 FunFam Extended synaptotagmin-2 413 553 - -
Trre5g05166 558 FunFam Plant synaptotagmin 252 394 - -
Trre5g05166 558 SMART C2_3c 434 532 IPR000008 -
Trre5g05166 558 SMART C2_3c 258 358 IPR000008 -
Trre5g05166 558 PRINTS C2 domain signature 476 489 IPR000008 -
Trre5g05166 558 PRINTS C2 domain signature 450 462 IPR000008 -
Trre5g05166 558 PRINTS C2 domain signature 498 506 IPR000008 -
Trre5g05166 558 ProSiteProfiles C2 domain profile. 414 533 IPR000008 -
Trre5g05166 558 Gene3D C2 domain 430 556 IPR035892 -
Trre5g05166 558 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 549 IPR045050 GO:0008289
Trre5g05166 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 386 IPR035892 -
Trre5g05166 558 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 432 550 IPR035892 -
Trre5g05166 558 CDD C2 259 361 - -
Trre5g05166 558 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05166 Trre-Chr5 52888507 52894036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05166 259 551 Lipid Metabolism Gene Families AT4G00700 23.642 1.92e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05166 - - gmx:100787972 936.406