Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05157 ATGGGTACTCTTACCCTCTCACTTCTCAAATCCTTTACACCCTTTTCCTCCATACCTCCAACCCTTTCCCCTATTTACCGCGCCGCAGTTTTCAGAAAAAACAACCTCCCTTCTTTTCGCGCCGTCTCATCATCCTCTCAGCCGTTAACTTCCCAGAAGAATTGCAACGAAGGTCAAAATTCCCGTTCAAAGAGTTCATCTCCAGAGATATGGCTTCATAACACAATGAGTAAAAAGAAAGAGCTTTTTAAACCCAAAGTTGAATCAAAAGTTGGAATGTATGTTTGTGGAGTTACTGCTTATGATCTTAGCCACATTGGTCATGCTCGTGTTTACGTTAATTTCGATCTTCTTTATAGATATTTTAAGCACTTGGGATATGAAGTTTGTTATGTTCGCAATTTTACTGATGTAGATGACAAGATAATTGCTAGATCAACGGAGTTAGGAGAAGATCCAATTAGTTTGAGCCGACGCTATTGTGAAGAGTTCTGTCAAGACATGGTAACTCTTAATTGTTTGCCTCCTACCAAGGAACCAAAAGTCTCCGAGCATATGCCGCAAATTATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCATACAATGTTGATGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAATTATCTAGTCGAGGTCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTATGGAAGTCTACAAAGCCAGGGGAGCCATTTTGGGAAAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGTAGTGCTATGAGTGCAACTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTATTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCGGCTTGTAGTAAAAGTGATATTAGTGTATGGATGCACAATGGTTTTGTCAACATTGATTCTGTGAAGATGTCTAAATCTCTGGGAAACTTTTTCACAATACGGCAGGTTGTAGATGTTTATCATCCGCTGGCTTTGAGATATTTTTTGATGAGTGCCCATTATAGATCTCCTATGAACTACTCTAATATACACCTTGAAAGTGCTTCAGACCGTGTTTATTATATATATGAGACATTACATGAATGTGAAAGCTTGCTGAACCAGTATGATCAGACGGTTAGGAAGGACTCCGTCCCATCAGATACTTTGAGTATTATTGATAACCTCTATGATGTTTTTCTGACCTCAATGTCTGATGATCTTCACACTCCGGTTGTATTGGCTGGACTGTCTGATCCACTTAAATTAATTAACGACTTGCTGCATACTCGCAAGGGGAAAAAACAACAATTTCGAATAGAATCACTTGCAGCGTTGAAGAAAAGAATTGGTGATGTACTTACTGTTTTAGGACTTATGCCTTCGAGTTACTATGAGGTTTTACAGCAGCTTAAGGAAAAAGCTCTTAAGCGTGCAAACTTGACAGAAGAAGAAATCTTGAAGAAGATTGAAGAACGAGATGATGCTAGAATACAAAAGGAGTATGCCAAATCCGACGCCATAAGGAAAGATTTGGCTGATGTTGGTATTGCTCTTATGGACAGTCCAAATGGTACAGCTTGGAGGCCCACCATTCCTCTTCCGCTTCAAGAGCAGCTCTAG 1695 0.3994 MGTLTLSLLKSFTPFSSIPPTLSPIYRAAVFRKNNLPSFRAVSSSSQPLTSQKNCNEGQNSRSKSSSPEIWLHNTMSKKKELFKPKVESKVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGYEVCYVRNFTDVDDKIIARSTELGEDPISLSRRYCEEFCQDMVTLNCLPPTKEPKVSEHMPQIIDMIEKILNNGYAYNVDGDVYFNVEKFPEYGKLSSRGLEDNRAGERVAVDSRKKNPADFALWKSTKPGEPFWESPWGPGRPGWHIECSAMSATYLGYSFDIHGGGIDLVFPHHENEIAQSCAACSKSDISVWMHNGFVNIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMSAHYRSPMNYSNIHLESASDRVYYIYETLHECESLLNQYDQTVRKDSVPSDTLSIIDNLYDVFLTSMSDDLHTPVVLAGLSDPLKLINDLLHTRKGKKQQFRIESLAALKKRIGDVLTVLGLMPSSYYEVLQQLKEKALKRANLTEEEILKKIEERDDARIQKEYAKSDAIRKDLADVGIALMDSPNGTAWRPTIPLPLQEQL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05157 564 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 409 554 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre5g05157 564 CDD CysRS_core 71 372 IPR032678 -
Trre5g05157 564 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 372 554 - -
Trre5g05157 564 Gene3D HUPs 51 372 IPR014729 -
Trre5g05157 564 PANTHER CYSTEINYL-TRNA SYNTHETASE 64 561 IPR024909 -
Trre5g05157 564 Coils Coil 489 509 - -
Trre5g05157 564 Hamap Cysteine--tRNA ligase [cysS]. 70 555 IPR015803 GO:0004817|GO:0005524|GO:0006423
Trre5g05157 564 SUPERFAMILY Nucleotidylyl transferase 69 377 - -
Trre5g05157 564 FunFam Cysteine--tRNA ligase 69 370 - -
Trre5g05157 564 NCBIfam cysteine--tRNA ligase 72 553 IPR015803 GO:0004817|GO:0005524|GO:0006423
Trre5g05157 564 MobiDBLite consensus disorder prediction 41 68 - -
Trre5g05157 564 Pfam tRNA synthetases class I (C) catalytic domain 83 379 IPR032678 -
Trre5g05157 564 Gene3D - 373 554 - -
Trre5g05157 564 PRINTS Cysteinyl-tRNA synthetase signature 258 276 IPR024909 -
Trre5g05157 564 PRINTS Cysteinyl-tRNA synthetase signature 129 138 IPR024909 -
Trre5g05157 564 PRINTS Cysteinyl-tRNA synthetase signature 289 310 IPR024909 -
Trre5g05157 564 PRINTS Cysteinyl-tRNA synthetase signature 93 104 IPR024909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05157 Trre-Chr5 52847437 52851725 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05157 K01883 - gmx:100786700 959.903