Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05122 ATGTCGGATTTACCTAAAGATTTACCGAAAGGTGATTCGATTCAAATCAGAGAGGTTTGGAATCATAATCTGGAAGAAGAAATTGCTTTAATCCGTGATGTTGTTGATGAATTTAACTATGTTGCTATGGATACCGAATTTCCTGGTGTTGTTCTTCGTCCTGTAGGAAATTTTAAGCACATCAATGATTTTAACTACCAGACTTTGAAGGATAACGTTGATATGTTGAAGCTGATTCAGTTAGGTTTAACTTTTTCTGATGAAAATGGAAATTTACCTACTTGTGGCACTGAAAGTCCTTGCATCTGGCAATTCAACTTTCGCGAGTTCAACATCAGCGAAGATATTTTTGCTGCTGATTCGATTGAGCTTTTGCGTCAGTGTGGAATTGATTTTAAGAAAAACAGCGAGCAAGGAATTGATGTGAACCGATTCGGTGAGCTTCTTATGTCGTCGGGGATTGTGTTGAATGATAATGTTCATTGGGTTACTTTTCACAGTGGTTATGATTTTGGTTATCTGCTGAAGCTGTTAACATGCAGAAGTTTGCCAGATACACAAGCTGGGTTTTTCGATTTGATCAAGATTTATTTCCCTGTGGTTTATGATATCAAGCATTTGATGAAATTCTGTAACAGTCTTCATGGTGGTTTGAACAAGCTCGCGGAGTTGTTGGAAGTGGAAAGGATCGGTGTTTGCCATCAAGCTGGATCGGATAGTTTACTCACTGCGTGTACATTTAGGAAGTTGAGGGAAACATTCTTCAACGGCGAAACAGAGAAATATTCTGGTGTGTTGTATGGATTAGGTGTTGAGAAATCAGACTAA 828 0.3841 MSDLPKDLPKGDSIQIREVWNHNLEEEIALIRDVVDEFNYVAMDTEFPGVVLRPVGNFKHINDFNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPCIWQFNFREFNISEDIFAADSIELLRQCGIDFKKNSEQGIDVNRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKIYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRETFFNGETEKYSGVLYGLGVEKSD 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05122 275 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 14 270 IPR039637 GO:0004535|GO:0030014
Trre5g05122 275 FunFam Putative CCR4-associated factor 1 7 6 273 - -
Trre5g05122 275 SUPERFAMILY Ribonuclease H-like 16 269 IPR012337 -
Trre5g05122 275 Gene3D - 4 273 IPR036397 GO:0003676
Trre5g05122 275 Pfam CAF1 family ribonuclease 19 140 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05122 Trre-Chr5 52530051 52530878 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05122 K12581 - gmx:100785970 516.924