Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05119 ATGGCTCTTGGTTTCTTCGCTCTCGCTATTTTCCTCTTTCTCACTCTCGATCCTGATGTTTCTCCTTCTTCTACTGCTTCTGCTTCCGCTGCTTCATCAGAAGGCGTCGAGGTTCAGATTACTTATGGTTCGGTTATAAAGCTTATGCATGAGAAGACGAAGTTTAGGTTACATTCTCATGATGTGCCTTATGGTTCTGGCAGTGGTCAACAATCGGTTACTGGTTTTCCAACTGTTGATGATTCCAATAGTTACTGGATTGTCAGGCCTGAGCCGGGAACTTCTGCTAAACAAGGTGACGCTATTAAAAGTGGCACAATCATTAGATTACAGCACATGAGGACCAGGAAGTGGCTGCACAGCCATTTACATGCTTCCCCAATTTCTGGCAATCTCGAGGTCAGTTGCTTTGGTGGAGAGAATGATTCTGATACTGGGGACTATTGGAGGCTTTTAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAGGATTCGGCTTCAACATATTGACACTTTAGGCTATTTACATAGTCACGATAAGAAATACAGTCGGATAGCTGGGGGACAGCAGGAGGTTTGTGGTGTTCGTGAAAAGAAAGCTGACAATATCTGGTTGGCAGCTGAAGGTGTCTACCTTCCTGTTACTGAAGGCAAACAAGCTGAGTAG 672 0.4464 MALGFFALAIFLFLTLDPDVSPSSTASASAASSEGVEVQITYGSVIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPTVDDSNSYWIVRPEPGTSAKQGDAIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGENDSDTGDYWRLLIEGSGKTWKQDQRIRLQHIDTLGYLHSHDKKYSRIAGGQQEVCGVREKKADNIWLAAEGVYLPVTEGKQAE 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05119 223 ProSiteProfiles MIR domain profile. 157 211 IPR016093 -
Trre5g05119 223 SMART mir_2 37 91 IPR016093 -
Trre5g05119 223 SMART mir_2 157 211 IPR016093 -
Trre5g05119 223 SMART mir_2 99 154 IPR016093 -
Trre5g05119 223 ProSiteProfiles MIR domain profile. 37 91 IPR016093 -
Trre5g05119 223 SUPERFAMILY MIR domain 38 211 IPR036300 -
Trre5g05119 223 FunFam Stromal cell-derived factor 2-like protein 23 221 - -
Trre5g05119 223 PANTHER STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN 1 218 - -
Trre5g05119 223 Gene3D - 23 221 - -
Trre5g05119 223 ProSiteProfiles MIR domain profile. 99 154 IPR016093 -
Trre5g05119 223 Pfam MIR domain 72 204 IPR016093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05119 Trre-Chr5 52492289 52495356 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05119 - - gmx:100811638 391.349