Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05118 ATGGCGTTTGATGAGAAAGTGCTGGAAAATCAACTTATTGAAGCTGGTAACAAGCTTGCAGATCCTCCTTCTTCGGTGGATGAACTCCTCAAACTGCTAACTCAACTTGAGAGCTTGTTATCAAGGGTGGAACAGGCACCTAAAGAATCTATGCAAGCTGCACTTTCTCCATCTTTGAAAGCATTGGTTGCGGATACACTTTTAAGGCATTCGGATCCGGATGTCAAAGTTGCACTTGCCTCTTGCATCAGTGAAATTACAAGAATTTCTGCACCTGAAGCTCCTTATGATGATGATCAAATGAAGGAGATATTCCAATTAGTTGTATCTTCATTTGAAAATATACATGATAAGTCAAGCCAATCGTATGTGAAGAGAAAAGCTATTCTCGAAACTGTTGCAAAGGTCAGATCATGCGTGGTAATGCTGGACCTTGAATGTGATGCACTGATTTTGGAGATGTTTCAGCATTTTTTGAAGGCCATAAGGGAACATCATCCGGAGAATGTTTTTTCATCCATGGAAACCATTATGACACTTGTTATAGAGGAAAGTGAAGATATATCCTTTGATTTACTTTCTCCACTCCTGGACAGCATTAAGAAAGACAATAAGGAAGTTTTACCGATTGCCCGGAAGTTGGGAGAGAGGGTCCTCAAAAATTGTGCAACCAAACTTAAGCCCTACTTAGTGCAAGCAGTGAGAACCTTTGGTACTTCTGTGGATGATTACAGTGAAGTACTTGCTTCAATATGCCAAGATACATCTGACAGCTTGGAGAAAAATGGTGAAGACAAGGGCAAGTCAGCAAAACTACTACTTAAGGAGTCAAAACAAGTGGTTAAAGAGGTAGTTAAGGAAGCTGCACATTTGCCGCAAGATAATCGAGATGGGAATAGGTCTTCCAAGTCAGCCACAAACAATGGTGTTGCACGTATTGGAGAAGATGGCACTTTTACAGATTCGAAGTCCATTAAAAAGAAAGAGGAGCTCAATGATTTGGATGATGTAAAAATTAACAAGAATGAACAAAAACCAGAACCAGTCACCAAGAAGAGCCGGAGGAAATCGAGCTATTCAACCAAATTTGCTAATGAAAAAGGTGAAAAGATGATGGATTCTGAAAGTCGCAGCAAGGAAGTTCTCAGTTCCCTGCACAAGGACCAGGGAAGAAATGACGAATCTGAAGTTGTGGCTTCTGCTTCACCTAGTGACAGCCTCCCTGACGAAAATCAGTCAGGGAAACCTGGAAAAGCAAAAACTAAAGATAGCCCTGAAAATGTCGAGGCTGCAGAGGTTGTTTCAAAAAAGTCATCCGAAGGAGGAAGTATATCAAAACCCAAACTTATGAAGCAGTCGGTGAAAAAGTCGCCTGGTCAGAACTTGGGTGTAAAAAAAACTGCTGGTACAGATTCAGGAAAAAAACAAAGCGGGGCTGCTAATAAGCAGATGGTCTCTTCTCCAAGGTCTGATACCAAATCCTTTGAAGATGGAAAGTTAGAGGAGACTTCCAAGAGAAGTGCAAAGAGGAAACACGACTCAGGACGAAAAAATGAGTCTGTGATCAAGGAATATGATCAAAACCTTGTTGGTGAACGAGTTGAAGTATGGTGGCCTAAGGATCGTGAGTTTTACAAAGGTGTCATCGAATCTTTTGATTCTGCCAAAAAGAAGCACAAGGTGCTTTATGATGATGGTGAAGTAGAAGTGCTAAATCTTGTCAGGGAAAAGTGGCACATCATTGAAGATGATTCAGTTGCAGACGAGGAAGAAGGAAGTGATCATGGCAGTCTTGATGCTTCCGCTGAAATGCCTGCAAGGAAGAAAGCAAAACCAAGTTCCGGTGATCCGGCTAATAAAGGAAAGCCGCGTCTTTCTTCCAGTGGCGGAGCATCAGGATCAAGTAAATCAAAGGGTTCTGCATTGAAGTCTGGTCAGAAGTCTAAGGATGGAAACAAGTCCAAGACTATCAGTGATTCCGAGGATGAAGTTAGCAGAAAGTTTAAGGACAGCACTCCTAAATCTGCTGCACAGAAAATGACTGGTAAGTCCAAGAACATTGGCAGTTCCAAGACAAGCCAACCAAAGGATGAAGACCCTATCATACCAAAGAGTGGAGCATCCAACCAAAAAACTCCAAAGGCTGCCGCTGCTGCTGCTGAGGGGAAGCCCCCAAAAAGTGGTGGAAAGTCATCTACTTCTGATGGAAAGTTTTCATTGAAGAAAAAATATATGGCGGATGACGACTCAGATGATTCAGCAAGAGAGGAGGTAGAATTTACAAAGGGCAAGACATCTGCTTCTTCAAAGGGACAGGGAAGTGAGGCCAAGACCGGAAAGAAGCGTCAGAGAAGCTAG 2358 0.4237 MAFDEKVLENQLIEAGNKLADPPSSVDELLKLLTQLESLLSRVEQAPKESMQAALSPSLKALVADTLLRHSDPDVKVALASCISEITRISAPEAPYDDDQMKEIFQLVVSSFENIHDKSSQSYVKRKAILETVAKVRSCVVMLDLECDALILEMFQHFLKAIREHHPENVFSSMETIMTLVIEESEDISFDLLSPLLDSIKKDNKEVLPIARKLGERVLKNCATKLKPYLVQAVRTFGTSVDDYSEVLASICQDTSDSLEKNGEDKGKSAKLLLKESKQVVKEVVKEAAHLPQDNRDGNRSSKSATNNGVARIGEDGTFTDSKSIKKKEELNDLDDVKINKNEQKPEPVTKKSRRKSSYSTKFANEKGEKMMDSESRSKEVLSSLHKDQGRNDESEVVASASPSDSLPDENQSGKPGKAKTKDSPENVEAAEVVSKKSSEGGSISKPKLMKQSVKKSPGQNLGVKKTAGTDSGKKQSGAANKQMVSSPRSDTKSFEDGKLEETSKRSAKRKHDSGRKNESVIKEYDQNLVGERVEVWWPKDREFYKGVIESFDSAKKKHKVLYDDGEVEVLNLVREKWHIIEDDSVADEEEGSDHGSLDASAEMPARKKAKPSSGDPANKGKPRLSSSGGASGSSKSKGSALKSGQKSKDGNKSKTISDSEDEVSRKFKDSTPKSAAQKMTGKSKNIGSSKTSQPKDEDPIIPKSGASNQKTPKAAAAAAEGKPPKSGGKSSTSDGKFSLKKKYMADDDSDDSAREEVEFTKGKTSASSKGQGSEAKTGKKRQRS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05118 785 Pfam Sister chromatid cohesion protein PDS5 protein 27 232 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 674 696 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 395 411 - -
Trre5g05118 785 SMART TUDOR_7 526 585 IPR002999 -
Trre5g05118 785 MobiDBLite consensus disorder prediction 288 318 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 625 647 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 336 525 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 454 491 - -
Trre5g05118 785 SUPERFAMILY Tudor/PWWP/MBT 528 567 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 582 785 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 336 394 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 298 313 - -
Trre5g05118 785 FunFam Binding protein 525 577 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 415 430 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 591 615 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 736 763 - -
Trre5g05118 785 MobiDBLite consensus disorder prediction 648 673 - -
Trre5g05118 785 CDD Tudor_Agenet_AtEML-like 530 580 - -
Trre5g05118 785 SUPERFAMILY ARM repeat 28 250 IPR016024 -
Trre5g05118 785 MobiDBLite consensus disorder prediction 492 525 - -
Trre5g05118 785 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 275 739 IPR039776 GO:0007064
Trre5g05118 785 Coils Coil 26 46 - -
Trre5g05118 785 Gene3D - 524 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05118 Trre-Chr5 52477994 52484252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05118 - - psat:127087777 922.539