Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05116 ATGGACGAAGACGAAATTCTCGGATACGTAACCGCATACTTGAAGAAGAAAGGGTTCAAGCAAACCGAAAAAGTTTTCCAAGAAGAATTTCAACAAAACAAAAGCAATTCATCCTCTAATTCCAATCTTGAGCCTGACATTGCAAATCACCTTGTTGCATTTTCTCAGTTGGAGAATGGTCCTGCAAGGTATCATAATGGATATAGTAGATTAAGAACATGGACTTATTCATCATTAGATTTATATAGGCATGAGTTGCTTCGTGTGCTTTATCCTGTGTTTATCCATTGCTTTATGGACCTTGTTGCAAAAGGGCATATTCAAGAAGCTAGGAATTTTTTCAATACTTTCCGTGAAGACCATGAAATGATGCACTTGCGTGACATTCAAAAGTTAGAAGGAGTTCTTTCTCCAACTCATTTGAAGGAAATGGAATTTGCTCATTCACTAAGGCAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTGCTGCTGCAACATCTACACAGTACTCAATCCACTACTATACTTGGTATAATCAATGAGCATATTAACTTCCAAGTTACCTCTGGGCAACCTAGCTTGATTTCTGATGATCCAGAGGCTGTTACCCTTACTGGAAGCAGCCAAGACGCAGCAAACCAGATAAACCAGAAAGAAATACATTGGGGGTTGCTTGAAGACTCACTAGAAGAACGGTTGGAAAAGCCCGGGACCTTGCTTTCAGACTCTGAAAAGGGTGACGGGGAATCAAAAGAGGGGGAGAATGATGAGAGTAAGAAAAGATCAATTGAAGTAGGCAAGCAAGGTGCTTCAGTCAAAAAGATAAAAAAAGACAAGGGTGGAAGTGCAACAGGGAAAATTGCAAAGCCTGAAGCTATCGTTGTACCAGCAGCTCCTCGTGTTAAATCAGACCTCCCCTTGCCCGTAATCCCAACAGAGGTGGAACAATCTATCCTTGAAGATTTAAGGAACCGTGTACAACTTAGTAGTGTGGCACTACCATCTGTTAGCTTTTATACTTTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCTCACGATGGATCATTGGTTGCTGGAGGATTTTCTGATTCATCACTAAAGGTTTGGGATATGGCAAAGCTTGGACAACAACCCTCCAGTTCTCTTTCACAGGGTGAGAATGATACGTCACAAAATGAACAAATGCTTGGGAAAAGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGCCACTCGGGGCCTGTTTATGCAGCTTCTTTTTGTCCTGTTGGGGATTTTATACTTTCATCCTCAGCAGACTCAACAATTCGTTTATGGAGCACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGCCACAATTATCCTGTCTGGGATGTTCAGTTTAGTCCCATGGGGCATTATTTTGCCAGCTCTTCACACGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCGGGACACTTGTCTGATGTGGATTGTGTTCAATGGCATGCCAACTGCAACTACATCGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGAGAGTGTGTCCGGGTTTTTGTTGGTCACAGGAGTATGGTCTTGTCTTTGTCAATGTCTCCTGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACTATCATGATGTGGGACCTCTCTAGTGGTCGCTGTGTCACACCTTTGGTTGGTCACACATCATGTGTCTGGTCACTCGCTTTCAGCTCTGAAGGTTCTATTCTAGCATCTGGATCTGCTGATTGCACTGTAAAACTATGGGATGTAAATACGAGCACCAAGGTTTCAAGGACTGATGAAAAAAACGGGAATACTAACAGACTCCGATCGCTGAAGACCCTACCAACCAAATCTACTCCTGTTAACACTTTACGGTTTTCTCGAAGGAATCTTCTTTTTGCAGCTGGAGCTCTTTCCAAAAATGCTTAA 2010 0.4209 MDEDEILGYVTAYLKKKGFKQTEKVFQEEFQQNKSNSSSNSNLEPDIANHLVAFSQLENGPARYHNGYSRLRTWTYSSLDLYRHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNTFREDHEMMHLRDIQKLEGVLSPTHLKEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTSGQPSLISDDPEAVTLTGSSQDAANQINQKEIHWGLLEDSLEERLEKPGTLLSDSEKGDGESKEGENDESKKRSIEVGKQGASVKKIKKDKGGSATGKIAKPEAIVVPAAPRVKSDLPLPVIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPSSSLSQGENDTSQNEQMLGKSGGKRQYTLFQGHSGPVYAASFCPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRSMVLSLSMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFSSEGSILASGSADCTVKLWDVNTSTKVSRTDEKNGNTNRLRSLKTLPTKSTPVNTLRFSRRNLLFAAGALSKNA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05116 669 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Trre5g05116 669 CDD TAF5_NTD2 61 192 IPR007582 -
Trre5g05116 669 Gene3D - 495 575 IPR015943 GO:0005515
Trre5g05116 669 CDD WD40 415 664 - -
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 624 IPR001680 GO:0005515
Trre5g05116 669 SUPERFAMILY WD40 repeat-like 339 665 IPR036322 GO:0005515
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 447 IPR001680 GO:0005515
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Trre5g05116 669 Gene3D - 248 494 IPR015943 GO:0005515
Trre5g05116 669 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Trre5g05116 669 SUPERFAMILY Taf5 N-terminal domain-like 49 192 IPR037264 -
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 582 IPR001680 GO:0005515
Trre5g05116 669 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 664 - -
Trre5g05116 669 MobiDBLite consensus disorder prediction 384 404 - -
Trre5g05116 669 MobiDBLite consensus disorder prediction 241 288 - -
Trre5g05116 669 Gene3D TFIID subunit TAF5, NTD2 domain 41 192 IPR037264 -
Trre5g05116 669 Pfam WD domain, G-beta repeat 454 489 IPR001680 GO:0005515
Trre5g05116 669 Pfam WD domain, G-beta repeat 494 531 IPR001680 GO:0005515
Trre5g05116 669 Pfam WD domain, G-beta repeat 577 615 IPR001680 GO:0005515
Trre5g05116 669 Pfam WD domain, G-beta repeat 412 447 IPR001680 GO:0005515
Trre5g05116 669 Pfam WD domain, G-beta repeat 347 377 IPR001680 GO:0005515
Trre5g05116 669 Pfam WD domain, G-beta repeat 535 573 IPR001680 GO:0005515
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 578 - -
Trre5g05116 669 Gene3D - 576 668 IPR015943 GO:0005515
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 498 IPR001680 GO:0005515
Trre5g05116 669 FunFam Transcription initiation factor TFIID subunit 5 493 662 - -
Trre5g05116 669 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 457 491 - -
Trre5g05116 669 ProSitePatterns Trp-Asp (WD) repeats signature. 602 616 IPR019775 -
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 447 - -
Trre5g05116 669 Pfam WD40 associated region in TFIID subunit, NTD2 domain 58 187 IPR007582 -
Trre5g05116 669 SMART WD40_4 534 573 IPR001680 GO:0005515
Trre5g05116 669 SMART WD40_4 450 489 IPR001680 GO:0005515
Trre5g05116 669 SMART WD40_4 408 447 IPR001680 GO:0005515
Trre5g05116 669 SMART WD40_4 576 615 IPR001680 GO:0005515
Trre5g05116 669 SMART WD40_4 338 377 IPR001680 GO:0005515
Trre5g05116 669 SMART WD40_4 492 531 IPR001680 GO:0005515
Trre5g05116 669 ProSitePatterns Trp-Asp (WD) repeats signature. 560 574 IPR019775 -
Trre5g05116 669 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Trre5g05116 669 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Trre5g05116 669 PRINTS G protein beta WD-40 repeat signature 602 616 IPR020472 -
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 536 - -
Trre5g05116 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 583 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05116 Trre-Chr5 52442395 52450746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05116 541 625 Miscellaneous Gene Families AT5G08390 32.558 3.10e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05116 K03130 - gmx:100805953 1180.62