Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05113 ATGATGATTCGATTTTTACTTGTGGTTGTTATGTTGATAAGTTGTACGGACATATACAAAAAGGTTAATGGAGATGAATACACACTTGAATCAGTGAGAGCATCGTTGGTTAGACAAGAAGATACAATCGTATTTAATGTGATTGAAAGAGCAAGGTTCCCTCTCAATTCTCCTACCTATGATCAACATTATGCTTCCATTCCCAAATTTTCTGGCTCATTGTTCGATTTCATTCTTAACCAGACAGAGGATATTCAAGCCAAGATGGGAAGATATATCAACCCTGAAGAAAACTCCTATGAAGAAAATTTACCAGCCTCACTTGTGCCGCATTACAACTTTTCACAGTTTTTGCATCCTGCAGCTGCTTTGGTTAACATAAACAAGAGTATAAGGAATGTTTATTTCCAAAAGATGCTTCCACTTTTTGTTACTTCTGGGGATGATGGCAACTATGCACAAACTGCAGCAAGTGATCTTTCATTATTGCAGGCCATCTCTAGAAGGATTCATTATGGAAAGTTTGTAGCTGAGGTAAAGTTCAAGGAATCTCCTCATGACTATGAGCCTTTAATTCGTGCCAAGGACAAAAAAGCATTGATGAAATTGTTGACAGTGAAGAGCGTAGAAGATATAGTTGTGAAGAGAGTTGAAAAGAAGGCAATGGTGTTTGGTCAAGAAGTGAGACTTGATCATGAAGTCAAGGGAAAATACAAAGTTGATCCAACAATAGTTTCTCGTTTATACCTAAACTGGATAATACCCCTAACAAAAGAGGTTGAAGTTGAGTACTTATTACGTCGTCTCGACTGA 813 0.3739 MMIRFLLVVVMLISCTDIYKKVNGDEYTLESVRASLVRQEDTIVFNVIERARFPLNSPTYDQHYASIPKFSGSLFDFILNQTEDIQAKMGRYINPEENSYEENLPASLVPHYNFSQFLHPAAALVNINKSIRNVYFQKMLPLFVTSGDDGNYAQTAASDLSLLQAISRRIHYGKFVAEVKFKESPHDYEPLIRAKDKKALMKLLTVKSVEDIVVKRVEKKAMVFGQEVRLDHEVKGKYKVDPTIVSRLYLNWIIPLTKEVEVEYLLRRLD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05113 270 ProSiteProfiles Chorismate mutase domain profile. 20 270 IPR008238 GO:0004106|GO:0009073
Trre5g05113 270 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Trre5g05113 270 NCBIfam chorismate mutase 28 270 IPR008238 GO:0004106|GO:0009073
Trre5g05113 270 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 22 270 IPR037039 GO:0004106|GO:0009073
Trre5g05113 270 PANTHER CHORISMATE MUTASE 24 270 IPR008238 GO:0004106|GO:0009073
Trre5g05113 270 SUPERFAMILY Chorismate mutase II 26 270 IPR036263 GO:0046417
Trre5g05113 270 PIRSF Chor_mut_AroQ_eu 16 270 IPR008238 GO:0004106|GO:0009073
Trre5g05113 270 FunFam Chorismate mutase 20 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05113 Trre-Chr5 52410694 52413630 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05113 K01850 - gmx:100791095 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05113 5 52410694 52413630 Trre5g05113 5 52410694 52413630 ECH