Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05112 ATGGGTCACGTTGGTTCAAGCAAAGACGCAAACAAACTGAATATGAACGATTTTGATCTAGAAGACGATTACACTCTCGACACAGAAATGGAAGACATTGACCTAGACGAAGATCCATCAACAAACTCAGAAATCCTCAACGAATTAGGTCCTGATTTAGTGAAATATTTCTGCAAAAAAGCTTCGGTGATGTTCTTCGACGAATATGGTTTAATCAGTCATCAAATCAACTCGTATAATCAATTTATCAGTTCTGGTCTTCAAGAAGCTTTCAATTCGTTCGGAGATCTCACTGTTACTCCTGGTTTTGATCCTTCTAAGAAAGGAGATAACGAGCATTATCGTTATGCGACTGTGAAATTTGGAAATGTAACCCTTGATAGACCTAAATTTTGGTGTGGTGAAGGTAATGCTCAAGAGTTGAAGATGCTTCCTAGACATGCTCGTTTGCAGAGAATGACTTATGCTTCTAAAATGAAAGTTCAAGTTCAAGTTCAGGTGTATATTCCGAAGAAGGTTCGGAGTGATAAATTTAAGACCGGGAAAGAAGAATACATTGATAATGATATTATCATGGAAGACAAGAGAGAAATAACTATCGGGAGACTTCCTGTTATGGTTATGTCTGATCTATGTTGGATGAGTGAAGCTGAAAAAGGTGATTGTGAATTTGACCTCGGAGGCTACTTTCTCATCAAGGGTGCTGAGAAGATTTTTATTGCACAGGAGCAAATATTTCTGAAGAGGCTCTGGGTTTCAAATATTCCGTATTGGGCAGTTGCATACAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAATTGGTGGAAAATTCCACTCTTGAAGGAATTAAAAACGGTGAGAAGATGCTGACAGTATATTTTCTGTCTGTGGAGATTCCTGTATGGATACTTTTTTTTGCTCTTGGCGTCACTTCAGATAAAGAGATTGTTGATCTCATTGATTATGAAGTGGGAGATGGAAGAGTTCACAACATTCTCTTTGCTTCCATTAGGGAGGCCGATGAGAAGTGTGAAACATTTCGCAGGGGAAAGAATGCCCTTCTTTTCTTAGAGGAACGTGTAAAAGGTGTCCAATTTCCACCACCCGAAACTATTGACGAGTGCCTTAACATGTATGTCTTTCCGAGCATTAAAGGGTTAAAAAGAAAGGCACGGTACCTGGCATACATGGTGAAAGTTCTCTTGCTGGCATATACTGGCCGCCGAAAAACTGATAACAGGGACGACTTTCGAAATAAGAGGCTTGAGTTGGCTGGTGAGCTGCTCGAGCGTGAGATTAAAGTACATTTTGCACATGCTCGGAAGCGAATGGGGAAGGCTCTTCAGAGAGATCTTTATGGAGATCGAGATGTTCGTCAAATTGAGCACTATCTTGATGCTTCCATTATTACAAATGGTCTCCAAAGAGCGTTTTCTACTGGAGCATGGACACATCCTTTTAAAAGGATGGAAAGGATTTCTGGTGTGGTTGCAACTCTTGGCCGAACAAATCCATTACAAACCATGGCTGAATTAAGAAGAACAAGGCAACAGGTTCAGTACACAGGAAAGGTTGGGGATGCTAGATACCCGCATCCTTCACACTGGGGTAAGGTTTGTTTCCTGTCTACCCCAGATGGTGAAAACTGTGGACTGGTAAAAAATTTGGCTGTCACAGGAGTGGTAAGTACCAATGTAACAGAATCGATACTTCCCCAGCTGTTCGAGTGTGGAATGGAAGAACTTGTTGATGATACTACCACTGTTCTTGGAAGAAAAGAAAAAGTCTTCCTAAATGGGGACTGGGTCGGAGTTTGTTCAGATTCCACATCATTTGTAGCAGAGCTACGAAATAGAAGACGGAAAAATGAACTGCCTCATCAGGTGGAAATCAAAAGAGATCAAAACCAACAAGAAGTGCGCATATTATCTGATGCAGGAAGGATTCTCCGTCCACTCTTGGTAGTTAGTAATCTGCTCAAGATTAAAGGATCTAAATCGGACCATAAATCTTTCAAGTCCTTACTGGATAATGGCGTGATTGAGCTGATTGGTCCTGAAGAAGAAGAGGATTTCAAGACTGCTTGGGGTGTTAAGTATTTATTTGGCCAAGAGGGAAAGTCTTCTGTGAAGTACACACATTGTGAGCTGGATATGTCATTCTTGTTGGGTCTAAGTTGTTCACTTGTTCCATTTGCAAATCATGACCATGCAAGGAGAGTGTTGTATCAATCCCAGAAGCATTCTTCACAGGCTATTGGCTATTCTACAACAAATCCCGATATAAGAGTTGATGCTTTGTCTCACCAATTATTTTATCCTCAAAGACCACTTTTTCAGACTATGTCATCTGAGTGTCTTGGAAAACCTGGATATCTAGGTCAAAATAAAGTTCTTCCGAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTTGGATATAATCAAGAAGATTCCTTGGTGATGAACCGTGCTTCTCTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAAGCTGAAATTGAAAATAAGGAATCTTCTGATAAGAGAAAGAAACCTGAAGACATCGTAAACTTTGGAAAGATACAGAGTAAAATTGGTCGAGTTGATAGCCTTGATGAGGATGGCTTTCCATTTGTTGGCGCGAATTTGCAGAGTGGTGATATTATTATTGGGCGGTGTGCTGATTCAGGGACAGACCATAGTATAAAATTAAAACACACCGAAAGGGGTTATGTTCAAAAGGTTGTGCTGTCCTCTAATGATGAGGGGAAGAATTTTGCTACTGTTTCGTTAAGACAGGTTCGAAGCCCAGTTCTTGGAGATAAGTTCTCCAGTATGCACGGACAGAAGGGTGTTTTAGGATTTCTTGAGTCTCAGGAAAATTTTCCTTTCACAAAACAAGGTATTGTTCCTGATATTGTCATAAATCCACATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTAGAAGCTGCTTTAGGAAAGGGTATTGCTTGTGTTGGTTCATTGAGAAATGCTACTCCTTTCTCCACTTCCTCTGTTGAAGCCATTACTGACCAACTTCACAGAGCTGGCTTTTCAAGATGGGGAAATGAACGAGTATACAATGGGAGGACTGGTGAGGTGGTTCGCTCACTCATATTTATGGGGCCAACATTCTACCAGCGACTGCACCACATGTCTGAGGACAAAGTAAAATTCAGGAACACTGGTCCAGTTCACCCACTGACTCGACAGCCTGTCGCTGACAGGAAGCGATTTGGAGGTATCAAGTTTGGTGAGATGGAGCGTGATTGCCTGATAGCCCATGGTGCATCGGCTAACTTGTATGAACGACTCTTCACCCTGAGTGATTCATCTCAGATACACATTTGTAGTAAATGCAAAAATGTTGCAAATGTGATCTTGCGACCAGTATCTGGTGGCCGGAAAATACGAGGTCCCTATTGCCGTTTCTGTGAATCAGCCGATGATATTGTGGTGGCCAGTGTTCCATATGGAGCTAAGTTATTGTCTCAGGAGCTGTTCAGCATGGGCATTAATCTCAAGTTTGAAACTGAGCTTTGCTAG 3606 0.4149 MGHVGSSKDANKLNMNDFDLEDDYTLDTEMEDIDLDEDPSTNSEILNELGPDLVKYFCKKASVMFFDEYGLISHQINSYNQFISSGLQEAFNSFGDLTVTPGFDPSKKGDNEHYRYATVKFGNVTLDRPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVQVQVQVYIPKKVRSDKFKTGKEEYIDNDIIMEDKREITIGRLPVMVMSDLCWMSEAEKGDCEFDLGGYFLIKGAEKIFIAQEQIFLKRLWVSNIPYWAVAYKSQMKRNRMVVKLVENSTLEGIKNGEKMLTVYFLSVEIPVWILFFALGVTSDKEIVDLIDYEVGDGRVHNILFASIREADEKCETFRRGKNALLFLEERVKGVQFPPPETIDECLNMYVFPSIKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFAHARKRMGKALQRDLYGDRDVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTNVTESILPQLFECGMEELVDDTTTVLGRKEKVFLNGDWVGVCSDSTSFVAELRNRRRKNELPHQVEIKRDQNQQEVRILSDAGRILRPLLVVSNLLKIKGSKSDHKSFKSLLDNGVIELIGPEEEEDFKTAWGVKYLFGQEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGYSTTNPDIRVDALSHQLFYPQRPLFQTMSSECLGKPGYLGQNKVLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSDKRKKPEDIVNFGKIQSKIGRVDSLDEDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFATVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEVVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFETELC 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05112 1201 Pfam RNA polymerase Rpb2, domain 4 597 657 IPR007646 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 FunFam DNA-directed RNA polymerase subunit beta 828 947 - -
Trre5g05112 1201 CDD RNA_pol_B_RPB2 71 1197 IPR015712 GO:0003899|GO:0006351|GO:0032549
Trre5g05112 1201 Pfam RNA polymerase Rpb2, domain 6 728 1098 IPR007120 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 Gene3D RNA polymerase Rpb2, domain 2 254 411 IPR037034 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 Gene3D - 729 1084 IPR037033 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 Pfam RNA polymerase Rpb2, domain 2 285 424 IPR007642 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 Pfam RNA polymerase Rpb2, domain 5 673 719 IPR007647 GO:0006351
Trre5g05112 1201 Gene3D - 412 588 - -
Trre5g05112 1201 Gene3D - 64 245 - -
Trre5g05112 1201 FunFam DNA-directed RNA polymerase subunit beta 412 600 - -
Trre5g05112 1201 Gene3D RNA polymerase alpha subunit dimerisation domain 1085 1199 - -
Trre5g05112 1201 Pfam RNA polymerase Rpb2, domain 7 1100 1198 IPR007641 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 Gene3D - 759 947 IPR014724 GO:0003899
Trre5g05112 1201 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 62 1195 IPR015712 GO:0003899|GO:0006351|GO:0032549
Trre5g05112 1201 Pfam RNA polymerase Rpb2, domain 3 501 560 IPR007645 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 56 1199 - -
Trre5g05112 1201 ProSitePatterns RNA polymerases beta chain signature. 951 963 IPR007121 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 Pfam RNA polymerase beta subunit 70 460 IPR007644 GO:0003677|GO:0003899|GO:0006351
Trre5g05112 1201 FunFam DNA-directed RNA polymerase subunit beta 63 247 - -
Trre5g05112 1201 FunFam DNA-directed RNA polymerase subunit beta 1085 1199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05112 Trre-Chr5 52401448 52407429 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05112 K16252 - gmx:100815934 2014.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05112 5 52401448 52407429 Trre5g05112 5 52401448 52407429 ECH