Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05111 ATGCCTCACCTCTCCCGCGTTCCAGGAGTACTCTCCACCGGGGATGTGCTCCGGTGGATGGCTGCAAACTCGACTCGTAGACTTGATGTTATTGCTCAGTACTGGCAACTACTAGCTTCCCCTGATGATTCTCGCTCTGGTGATTATGGTTATACTCAAGATCAGATGCATAAGTTCGGTGCTCATCAAGGTGCTGCAGTTTATCAAGCATTAGATGATGCTGCAGACCGTAATGTTAATATTAGGTTACTGTCTCATTCTGGGGTTTATCCAACATTTACTTTAGAACCATCCAAACTTGCTAATGGAAGGCCAAATGTTAAGAATGTGACTTTGTTACTGAAGGATTGGTGGGGCTCTGGTATTGTCCATGCCAAAGTTTGGATTTCTGATAATAGGGATGTTTATATTGGATCTGCAAACAATGACTGGAAATCTCTTACACAAGTCAAGGAAGTTGGAATTTATCTTGCTGATTGTCCTGGAATAGCTAAAAAGGTTGAGGTCTATTTTAACAATTTATGGACACTAGCATCTCTCAATTCTTCAGCTTACACAAAAACAGTGATGGATCAACAGTGGCAAGTTGAAAGAAAGGTTCCTTGTTGGTCACATTTCATTAAACCAAGAGATAGGTGCAAGTCACCTCTTCCTCAATATGTGAAGACACCTCATGTTGCAGGATATCCTATTCTGTCTGACCCTTATATGTTTGAAGCCTCAATTCAAACTCCTGGGAGTAACTATTCAACAAAGCTTCCCCAAGTCAGCTATCTCTCCTTTGCTCCCCCAGAGCTATCATTTGGAAGTTACCAGAGTGATGAGCAGGCATGGATTGATACAATTAAATCTGCTGGAACAAGGGAGACAGTTAGAATCAATACCATGGACTGGCTAGGTCAGTCACAATTTACAGACCAAACTATTTTCTGGTCATCCTTGTCTTCTGCAATATCAGAGGTTGTGTTTTCCAAGCATGCAACAGTAAAGATACTAGTAGCATATTGGGCACACTTCATCAGTAGCACAGATGAGTACTTGAAATATCTCCTCTACACCAACAACCTATGCTCTTCTTCAAAATACAACAAATGTTCGGGTAAAGTTGAGATCAAATATTATGTGGTACCAGGTTTCAACAATACAGGACCTGCCATTCAGGGTGGAAATAGTACAGGAAATATATATCCTGATTTTACAAGAGTCAATCATGGAAAATATGTAGTTAGTAATGTAAGGGCTCACATTGGGACAAGCAACCTTGTATGGGACTATTTCTATGTTACAGCAGGTGTTAGCTTTGGGACATACATCACTGCCATTGTATCTCAACTTGGGGAGATATTTGATGCTGACTGGAACTCACCATATGCTGTTCCTATTCAAGAGCTAGAGAGAGCCTATATTTCTAGTTTCAAATAG 1422 0.4079 MPHLSRVPGVLSTGDVLRWMAANSTRRLDVIAQYWQLLASPDDSRSGDYGYTQDQMHKFGAHQGAAVYQALDDAADRNVNIRLLSHSGVYPTFTLEPSKLANGRPNVKNVTLLLKDWWGSGIVHAKVWISDNRDVYIGSANNDWKSLTQVKEVGIYLADCPGIAKKVEVYFNNLWTLASLNSSAYTKTVMDQQWQVERKVPCWSHFIKPRDRCKSPLPQYVKTPHVAGYPILSDPYMFEASIQTPGSNYSTKLPQVSYLSFAPPELSFGSYQSDEQAWIDTIKSAGTRETVRINTMDWLGQSQFTDQTIFWSSLSSAISEVVFSKHATVKILVAYWAHFISSTDEYLKYLLYTNNLCSSSKYNKCSGKVEIKYYVVPGFNNTGPAIQGGNSTGNIYPDFTRVNHGKYVVSNVRAHIGTSNLVWDYFYVTAGVSFGTYITAIVSQLGEIFDADWNSPYAVPIQELERAYISSFK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05111 473 Gene3D Endonuclease Chain A 259 456 - -
Trre5g05111 473 CDD PLDc_vPLD3_4_5_like_2 258 454 - -
Trre5g05111 473 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 119 146 IPR001736 GO:0003824
Trre5g05111 473 Gene3D Endonuclease Chain A 13 179 - -
Trre5g05111 473 SUPERFAMILY Phospholipase D/nuclease 26 177 - -
Trre5g05111 473 SUPERFAMILY Phospholipase D/nuclease 262 466 - -
Trre5g05111 473 SMART pld_4 399 425 IPR001736 GO:0003824
Trre5g05111 473 SMART pld_4 119 146 IPR001736 GO:0003824
Trre5g05111 473 PANTHER PHOSPHOLIPASE D - RELATED 1 464 - -
Trre5g05111 473 Pfam PLD-like domain 64 175 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05111 Trre-Chr5 52398177 52400635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05111 K16860 - gmx:100778897 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05111 5 52398177 52400635 Trre5g05111 5 52398177 52400635 ECH