Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05108 ATGGCGTTTTTGAGATCTCTCGTTTTCTCTACACTTCTTCTCTGTCTATTTCACACCGCTTACTGCTTCTACCTTCCCGGCGTTGCTCCACAAGACTTCTATAAGGGAGATATATTGCAAGTGAAAGTAAACAAATTGACATCAACAAAGACCCAGCTTCCATACTCATATTATTCACTTCCTTATTCTGCCCCCAAAAAAATACAGGATAGTACAGAAAATCTTGGGGAAGTGCTTCGTGGTGATCGCATTGAAAATTCACTATATGTGTTTAAAATGCGCGAGCCACAAATGTGTAATATTGTGGGTAAAATTAAACTTGATGCGAAAAATGCTAAGGAGTTCAAAGAGAAGATCAATGATGAATATCGGGTGAACATGATCCTAGATAACCTTCCTCTAGTTGTTCCCATAAAGCGAAATGATCAGGATTCTACTGTTTACCAGCTTGGTTTCCATGTTGGTCTTAAAGGGCAGTATACCGGGAGCAAGGAGGAAAAGTATTTTATCCACAATCATTTGGCATTTACTGTCAAGTATCATAGAGACGTGCAAACTGAATCTGCTAGAATCGTGGGCTTTGAGGTGAAGCCGTTCAGTGTTAAACACGAGTATGACAGTAAATGGGATGAGAAAAAGACTCGTTTGACAACCTGTGACCCTCATGCTAAGCACACGGTTGTAAACAACAACTCCCCTCAAGAAGTTGAAGAAAACAAGGAAATTATCTTCACATATGATGTAGACTTCCAGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTAATGAATGATGACCAAATTCACTGGTTCTCTATTGTAAACTCATTAATGATTGTTCTCTTCCTTTCGGGCATGGTGGCAATGATAATGTTGAGGACACTCTATCGTGACATTGCAAAGTATAATGAGCTTGAGACCCAGGAAGAAGCCCAAGAGGAGACTGGTTGGAAGCTTGTCCATGGGGATGTATTTAGGCCTCCTAACAACTCAGATTTGCTGTGTGTTTATGTTGGAACTGGTGTTCAATTTTTTGGGATGATACTAGTGACCATGATATTCGCCATCCTTGGATTCCTTTCTCCTTCTAACCGGGGTGGGCTCATGACAGCCATGCTCTTGGTTTGGGTTTTCATGGGAATATTTGCTGGTTATTCTTCAACTCGCTTGTACAAAATGTTCAAAGGATCAGAGTGGAAAAAAATAGCCCTCAGGACTGCAACCATGTTCCCTGCAATTGTCTCTGTCATTTTCTTCATATTAAATGCTCTCATATGGGGCCAAAAATCATCTGGAGCTGTGCCATTTGGTACAATGTTTGCCCTGGTCTTTTTATGGTTTGGGATCTCTGTTCCACTTGTTTTTGTGGGTAGCTATATTGGTTTCAAAAAACCTGCAATTGAGAATCCTGTGAAAACAAACAAAATTCCAAGGCAGATCCCTGAACAGGCCTGGTACATGAACCCAGCTTTCTCAGTTTTGATTGGGGGAATACTTCCATTTGGAGCTGTTTTCATTGAGCTTTTCTTTATCCTCACCTCAATCTGGTTGAATCAGTTTTACTACATATTTGGGTTCCTCTTTTTGGTCTTCATCATCCTCGTTGTCACTTGTGCTGAAATAACCATTGTGCTATGTTACTTCCAGTTGTGCAGTGAAGATTACTTGTGGTGGTGGCGGTCATACCTTACTTCTGGTTCTTCTGCACTATACCTCTTTCTTTATGCAACATTCTACTTCTTTACCAAGCTTGAAATCACAAAGTTGGTATCTGCAATATTTTACTTTGGGTACATGCTTATAGCTTCTTATGCGTTTTTTGTGGTAACCGGTACTATTGGATTCTATGCATGCTTCTGGTTCACAAGGCTCATCTACTCCTCTGTCAAAATTGATTAG 1911 0.4055 MAFLRSLVFSTLLLCLFHTAYCFYLPGVAPQDFYKGDILQVKVNKLTSTKTQLPYSYYSLPYSAPKKIQDSTENLGEVLRGDRIENSLYVFKMREPQMCNIVGKIKLDAKNAKEFKEKINDEYRVNMILDNLPLVVPIKRNDQDSTVYQLGFHVGLKGQYTGSKEEKYFIHNHLAFTVKYHRDVQTESARIVGFEVKPFSVKHEYDSKWDEKKTRLTTCDPHAKHTVVNNNSPQEVEENKEIIFTYDVDFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEETGWKLVHGDVFRPPNNSDLLCVYVGTGVQFFGMILVTMIFAILGFLSPSNRGGLMTAMLLVWVFMGIFAGYSSTRLYKMFKGSEWKKIALRTATMFPAIVSVIFFILNALIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFKKPAIENPVKTNKIPRQIPEQAWYMNPAFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFIILVVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAIFYFGYMLIASYAFFVVTGTIGFYACFWFTRLIYSSVKID 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05108 636 SUPERFAMILY MFS general substrate transporter 277 458 IPR036259 -
Trre5g05108 636 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 22 636 IPR004240 GO:0016020
Trre5g05108 636 Pfam Endomembrane protein 70 54 592 IPR004240 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05108 Trre-Chr5 52386467 52389842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05108 1 636 Miscellaneous Gene Families AT5G10840 82.535 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05108 K17086 - gmx:100780976 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05108 5 52386467 52389842 Trre5g05108 5 52386467 52389842 ECH