Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05102 ATGGCTGGGTCTGCGTGTGCATCTTCTTGTTGTGGTTCTGCGCTCATTCCTAAATCACCCCACAGCAAAACCTTCTTCATATCACCCACTCCAATTGCAGTAATCGTTGGTGGAAACAACAACAACAACAACAACAACGACAGAATTTCTCGTTTATGCGTTAGGGGTTCTATGGTTGATTCATCTTCCTCCTCTGATTTTATTAAGCGCATGGAGCAAACTTGGTTAATCTCTCAGCAACCAAGGCCAGTTGCGTGTTCATCTTGCAGCTCAAAAGGGCATATTGAATGCAAATGGTGCGGGGGTACTGGTTTTTTTGTTCTTGGCGACAACATGCTTTGTGAAGTTCCATCCAGAAACACCAGCTGTATTATTTGCACTGGAAAGGGGTCAACATGTTGCTCTAATTGTCAAGGAACAGGCTTTCGTGCAAAGTGGTTGGAACAACCTCCTACATCATAG 462 0.4437 MAGSACASSCCGSALIPKSPHSKTFFISPTPIAVIVGGNNNNNNNNDRISRLCVRGSMVDSSSSSDFIKRMEQTWLISQQPRPVACSSCSSKGHIECKWCGGTGFFVLGDNMLCEVPSRNTSCIICTGKGSTCCSNCQGTGFRAKWLEQPPTS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05102 153 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 83 143 IPR036410 -
Trre5g05102 153 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN 52 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05102 Trre-Chr5 52330280 52332064 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05102 - - lja:Lj0g3v0271799.1 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05102 5 52330280 52332064 Trre5g05102 5 52330280 52332064 ECH