Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05074 ATGGCGAATTTGGATCACACTCAGTTCAGCGACAACGAAGACGATTTCGAAATTCCTCTCACTCAAACACCAACTCTTCAACCTCTTTCAGACTCCAATACTCAACGACCTTCCAAGAAACCCAAAACCAAAACGACCGCGTTTCCTGGCAAAGAAAACATTCCCCCTTTCGATGATAATTGTAGTTTGGATTTCGTTCCTTCCACTTTAGATCCTGATTCCACCGCTCAAACCGTTTGTTCTTCTTCTGCTTCGGAACTGAAAAAGATTAACAAACGCGCTTATTCTCATAATTCATTAGAGTCTAGGTTAGTTGTGTCGAGAGCAAATGCTTTTGATTATGGTGAGTCAGGTTCGAAGGTGAATTTTGATAGCTCTGTTGATTGTCCTCTCTGTGGTGTTGATATTTCTGATTTAACAGAGGAACAGCGTTATCTTCATACCAATCATTGTCTCGATAAATCCGGAGAAGATGTTGATCTTCCTAGTGACGATGTGGGAGCTCAATCTGCGGCTAAAGTCTCTCCTGTTGTTGATTGGCTACGTGATCTCGGTTTAGCTAAATATGAAGAAATTTTCGCTAGGGAAGAAGTTGATTGGGACACTCTGCAATGGCTGACAGAAGAGGATCTGTTAAACATGGGCATAACTGCACTTGGTCCCAGAAAAAAGATTGTGCATGCCTTGTCAGAACTTAGAAGAGGATGTGCCTCTTCAAGTTCAAACGAGAAACATGGGGATGCTGGAGTTGATTCTATAAAGATTAGAAACCAGAAAGGCAAATCACAACATGATAAATCTGAAAGAAATGCCAATGAAAATGTTAAACCAGCAGCAAACAAATTAATTACTGAATATTTTCCGGGATTTGTTCCCAAAGAGAAGAAAGCTTCTGCCATTGCTGCAGAACAACATGAAACGAAAAAGAGTGACTCGGTTTCTGATCGAAAGCGCAAAGCAAAAGATATATCAACAAGTGCAAAGATTCGTGATGTTCCTAAATGGTGCGCCATACAAGGAACACCTTTCAGAGTGGATGCTTTCAAATACCTAAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCACATGGACCATTATCAAGGTCTCACCAAGTCATTCAATCATGGAAAGATCTATTGCTCCTCTGTTACAGCTAGACTTGTAAATATGAACATGGGAATTCCATATGATAAATTACACATTTTGCCTCTAAATCAAAAAATTGAAATAGCTGGTATTAGTGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATGATACTCTTTGAACCTCCAAATGGTAAGGCGGTACTTCACACAGGTGATTTTCGTTATAGTGAAGAAATGGCAAACAACCCTTTCCTGCGAATATGTCCTATTGACACTTTAATTCTTGATACCACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGGCTGTAATACAATTTGTTATTGATGCCATTCAAGCAGAAGCTTTTAATCCCCAGACTCTTTTTCTTATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCCCGTTCACTTCGCAAAAAGGTTTACGTGACTGCAGCAAAATTACGCCTTTTAAAATGTTTGGAATTAGCGGAAGAGGATATGCAGTGGTTTACTTCCAATGAGCATGAAAGCAACATCCATGTTGCCCCTATGTGGACACTTGCAAGCTTCAAAAGGTTGAAGCACATATCAAGTCAATATGCGAGTCGGTTCAGTCTTATAGTTGCTTTCTCTCCTACTGGTTGGACATTTGGCAAAGGTAAGAAGAAGTCTCCCGGAAGAAGGTGGCAGCAGGGTACTGTTATAAGGTATGAAGTTCCTTACAGTGAGCATTGCAGCTTTACAGAACTTAAAGAGTTTGTAAATTTTTTATCTCCAAATAATATTATACCGAGTGTGAATAATGATGGACCTGAATCTGCCGACGCAATGGTTTCTTCTCTCATGCCAACTTGA 2001 0.4023 MANLDHTQFSDNEDDFEIPLTQTPTLQPLSDSNTQRPSKKPKTKTTAFPGKENIPPFDDNCSLDFVPSTLDPDSTAQTVCSSSASELKKINKRAYSHNSLESRLVVSRANAFDYGESGSKVNFDSSVDCPLCGVDISDLTEEQRYLHTNHCLDKSGEDVDLPSDDVGAQSAAKVSPVVDWLRDLGLAKYEEIFAREEVDWDTLQWLTEEDLLNMGITALGPRKKIVHALSELRRGCASSSSNEKHGDAGVDSIKIRNQKGKSQHDKSERNANENVKPAANKLITEYFPGFVPKEKKASAIAAEQHETKKSDSVSDRKRKAKDISTSAKIRDVPKWCAIQGTPFRVDAFKYLRGDCSHWFLTHFHMDHYQGLTKSFNHGKIYCSSVTARLVNMNMGIPYDKLHILPLNQKIEIAGISVTCLDANHCPGSIMILFEPPNGKAVLHTGDFRYSEEMANNPFLRICPIDTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPQTLFLIGSYTIGKERLFLEVARSLRKKVYVTAAKLRLLKCLELAEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYASRFSLIVAFSPTGWTFGKGKKKSPGRRWQQGTVIRYEVPYSEHCSFTELKEFVNFLSPNNIIPSVNNDGPESADAMVSSLMPT 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05074 666 FunFam DNA ligase 6 338 497 - -
Trre5g05074 666 SUPERFAMILY SAM/Pointed domain 173 234 IPR013761 -
Trre5g05074 666 ProSiteProfiles SAM domain profile. 172 235 IPR001660 GO:0005515
Trre5g05074 666 Gene3D - 338 648 IPR036866 -
Trre5g05074 666 CDD SAM_superfamily 177 231 - -
Trre5g05074 666 Gene3D - 479 626 - -
Trre5g05074 666 Pfam SAM domain (Sterile alpha motif) 173 233 IPR001660 GO:0005515
Trre5g05074 666 FunFam DNA cross-link repair 1A protein 479 626 - -
Trre5g05074 666 CDD SNM1A-1C-like_MBL-fold 328 476 - -
Trre5g05074 666 Gene3D - 168 243 IPR013761 -
Trre5g05074 666 SUPERFAMILY Metallo-hydrolase/oxidoreductase 343 647 IPR036866 -
Trre5g05074 666 MobiDBLite consensus disorder prediction 1 56 - -
Trre5g05074 666 MobiDBLite consensus disorder prediction 247 272 - -
Trre5g05074 666 MobiDBLite consensus disorder prediction 14 42 - -
Trre5g05074 666 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 327 660 - -
Trre5g05074 666 MobiDBLite consensus disorder prediction 236 275 - -
Trre5g05074 666 Pfam Beta-lactamase superfamily domain 359 478 IPR001279 -
Trre5g05074 666 SMART SAM_4 169 235 IPR001660 GO:0005515
Trre5g05074 666 MobiDBLite consensus disorder prediction 298 324 - -
Trre5g05074 666 Pfam DNA repair metallo-beta-lactamase 547 651 IPR011084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05074 Trre-Chr5 52122788 52128781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05074 175 229 Glycosyltransferase AT3G07170 49.091 7.67e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05074 K15340 - gmx:100816321 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05074 5 52122788 52128781 Trre5g05074 5 52122788 52128781 ECH