Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05073 ATGGCGGCGGAGGAAGGCTGGTGTGTAGTCACCGGTGGTCGTGGTTTTGCTGCTCGTCATTTAGTTGAAATGCTAATCCGATTAAACACATACTGTGTCCGCATCGCCGATTTAGGATCCACCATTGAACTTGAACCCTCCGAACAATTAGGTCTTCTCGATCAAGCTTTACACTCCGGTCGTGCTCAATATGTCTCCGTCGATCTTCGCAACAAAGCTCAACTCTTAAAAGCATTTGAAGGAGTTGAAGCTGTGTTTCATATGGCGGCTCCGAATTCGTCTATTAACAATTACCAGCTTCATTATTCTGTTAGTGTTGAAGGAACAAAGAATGTTATTGATGCTTGTGTTGAGCTAAAAGTGAAGAGACTCATTTATACTAGTTCTCCTAGTGTTGTTTTTGATGGAGTTCATGGAATTCATAATGGAAATGAATCATTGCCGTATCCACCTTCGCATAATGATCATTACTCAGCAACTAAAGCCGAGGGTGAGGAATTGGTTATTAAGGCTAATGGGACTAGTGGACTGCTAACGTGTTGCATACGCCCTAGTAGCATTTTTGGACCCGGTGATAAACTGTTGGTGCCTTCATTGGTTGATGCTGCCAAGGCAGGGAAATCCAAGTTCATCATTGGTGATGGCAATAATGTATATGATTTCACATATGTTGAAAATGTGGCTCATGCCCATATATGTGCTGATCGAGCTCTTGCTTCAGAGGGAACCATTTCAGAAAAAGCTGCAGGACAGGCATATTTCATCACAAATATGGAACCTATAAAGTTTTGGGAGTTCATGTCTCTAATTTTGGAAGGTCTTGGATATCAAAGGCCAAGCATAAAGATCCCTGTCTTTGTTATCATGCCAATTGCACATTTGGTGGAGTGGATATATAGGCTGCTTGGTCCATATGGGATGAAGGTGCCTCAGCTAACCCCTTCAAGAATAAGACTCACATCTTGCACCAGATCTTTTGATTGCTCAAAAGCAAAGGACCGCCTTGACTATGCACCCATCATAACTCTACAGGAGGGCATACAGAGGACAATTGAATCATATCCACATTTGAGGGCTGAAAATCAACTTAAGTTTAAAAGAGAAGGTCCCTCCAAAGCTTCTGTATATCTTGGAAGTGGAAGAGTTGCTGACACGTTGCTTTGGAAGGATAAAAAACAAACTTTCACTACATTATTAGTCTTAATAGCAATATATGTCAACTTCATCGCATCTGAAAATACCTTCATTACTGCTCTTACAAAGCTTCTATTGTACTCATCAATCGGTTTATTCATTCATGGCATTCTTCCTGCAAAAATATTGGGGTACACTGTTGAGAAAATGCCCACTTCATGGTTTCACTTATCAGAAGATATGTCAAATCAAATTGCTCTCTCCGTAGCCTCATCGTTGAATTTTGCTGTGAATGCTTTAAAATCCCTTGCAGAAGGGAATAACTGGGAGTTGTTCTTCAAGGTTGTTTTCTCTTTGTTTGTTCTTAGCTTCCTGGGAGCCTTTTCACTTAAGAGCTTGTATACTACAGGACTTACCTTAGCATTTATAGCTTTCTACTTTTATGAAAAGAAGGAGGAAGACATTGACAGCTTATTTATAAAAACACATACTTTTGGATGCAAATTGAAGTCTGATCTCACCAAGAAGTTTCTTACTTCAAAGAAGATTGATTGA 1689 0.4014 MAAEEGWCVVTGGRGFAARHLVEMLIRLNTYCVRIADLGSTIELEPSEQLGLLDQALHSGRAQYVSVDLRNKAQLLKAFEGVEAVFHMAAPNSSINNYQLHYSVSVEGTKNVIDACVELKVKRLIYTSSPSVVFDGVHGIHNGNESLPYPPSHNDHYSATKAEGEELVIKANGTSGLLTCCIRPSSIFGPGDKLLVPSLVDAAKAGKSKFIIGDGNNVYDFTYVENVAHAHICADRALASEGTISEKAAGQAYFITNMEPIKFWEFMSLILEGLGYQRPSIKIPVFVIMPIAHLVEWIYRLLGPYGMKVPQLTPSRIRLTSCTRSFDCSKAKDRLDYAPIITLQEGIQRTIESYPHLRAENQLKFKREGPSKASVYLGSGRVADTLLWKDKKQTFTTLLVLIAIYVNFIASENTFITALTKLLLYSSIGLFIHGILPAKILGYTVEKMPTSWFHLSEDMSNQIALSVASSLNFAVNALKSLAEGNNWELFFKVVFSLFVLSFLGAFSLKSLYTTGLTLAFIAFYFYEKKEEDIDSLFIKTHTFGCKLKSDLTKKFLTSKKID 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05073 562 Pfam Reticulon 382 537 IPR003388 -
Trre5g05073 562 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 284 IPR002225 GO:0003854|GO:0006694|GO:0016616
Trre5g05073 562 ProSiteProfiles Reticulon domain profile. 382 534 IPR003388 -
Trre5g05073 562 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 354 IPR036291 -
Trre5g05073 562 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 8 353 - -
Trre5g05073 562 Gene3D - 1 358 - -
Trre5g05073 562 FunFam Reticulon-like protein 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05073 Trre-Chr5 52108877 52114900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05073 9 371 Lipid Metabolism Gene Families AT2G33630 32.461 3.21e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05073 K23558 - gmx:100799363 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05073 5 52108877 52114900 Trre5g05073 5 52108877 52114900 ECH