Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05070 ATGGGTGGTGAGGGTAGAGTTGAAGTTGTGAGTGGCAAAGGGTGTTCCAGGTTGTTTTCATCTTCATTTACTTCAGTCAGAGGTCTTCAGCCATTGGAGCAAATGTCTTCTGTTTCATCTTCTCCCCAAGTTTCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGTCCCAATCTGCATCCGCAATTAAGGTTGACTGAATCACTTTATAGTTTGAAGAGTCATGGGGATAACAATACGCCCTTGGATGATTTTAGACTGCTTCCCGGTTATACAAATGCTGGTAATTGTCTTCCTGGAAAAATCCATGAGATCAAGCATACTCATCATGGTGAAGAATTTCAAAGATTCTCTGGGAGAGAGTCTAACAGATGTCTGGCAACTCTGTCTGGTTGCTCCATCTATGTTGATCCAAGCATTTCATCCGAATTGCAGAACAAGGTTGTTGAGGCTGCTTCAAGAGAAGGTGCTAGTTTTGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTCGTGACTGAAGGGACATCCATTCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCACTGTGGATTCTCAAAACAGCTAAGGAGAAACAAGTGCAAAGGTTTGTTAACATGTCTGTTGATTTAGCAAGACAAGTTGGCTTGATGCTTGAAGACGTTCATAATGGCCTTTCAGGGAAGGAAGCAGTAAAGCAAAAAGTCCTTGATGAAGTTGGTTACAAAGAAAGGCAACAAATAGTAAATTCAGCAAAAAATGGTGTCAGGAGTCGCCGTGGTCGTCGAATGCAGACATGTCAGACTCCAATCCGCCCGATAACACCTAACAACCTTCTGGACTCTATCTGCTGGTCAATATCAGAAGCAACTTCAACTGCTTCCATTTATACAGACTCTTTCAGCGCTGAAGATCCTAATGAAAATCATAATTCAATATTTTTTGATGCAAAAGGGGATGGAAAGGATGCAGACGCTTCATTTTCGAACTCGACACGTCCTCTAACAGAAAGTGAAAAATCTGAGTTGATATTTAAAAACCATTTTCTTACCATACTCTTCCCAATTGACCGGTTTTCCGAGATTGGCCCTTCCACAAGAACATTTTTTAGCCATAACGGTTTTACGTGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAACATGCCAAGCCATGAAATAGAAGTGGCAATTCATACAGATTCAAGACATGCGGACAGACTCCGATCAGTGTACTCGAGTAAGGAAACAGCGGAGCATGGGTACGTAGTGTTCAAAAGAATTGAATTTTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAACGTGTAAGTGGGGACAACAACTCCAATGTGTATGAGTTATTACTTAGGGCATAA 1467 0.4117 MGGEGRVEVVSGKGCSRLFSSSFTSVRGLQPLEQMSSVSSSPQVSSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQLRLTESLYSLKSHGDNNTPLDDFRLLPGYTNAGNCLPGKIHEIKHTHHGEEFQRFSGRESNRCLATLSGCSIYVDPSISSELQNKVVEAASREGASFVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKQVQRFVNMSVDLARQVGLMLEDVHNGLSGKEAVKQKVLDEVGYKERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSTASIYTDSFSAEDPNENHNSIFFDAKGDGKDADASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFSEIGPSTRTFFSHNGFTCLQVLDHIHAFYQENMPSHEIEVAIHTDSRHADRLRSVYSSKETAEHGYVVFKRIEFLGSRTSFEMLKRVSGDNNSNVYELLLRA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05070 488 SUPERFAMILY BRCT domain 45 229 IPR036420 -
Trre5g05070 488 ProSiteProfiles BRCT domain profile. 153 236 IPR001357 -
Trre5g05070 488 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 86 - -
Trre5g05070 488 Gene3D BRCT domain 48 93 IPR036420 -
Trre5g05070 488 Pfam Family of unknown function (DUF6699) 312 472 IPR046522 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05070 Trre-Chr5 52064141 52067489 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05070 - - gmx:100815253 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05070 5 52064141 52067489 Trre5g05070 5 52064141 52067489 ECH