Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05048 ATGGCCTTGTCTTCTGCCACCACTACTACTGTATGCATTCCATGTAACAACATTCTTCCAAGAACTCAACCATCCAAGTTGATATTCTCAACTAACATTGTTTTTTCTGTAAAACTACCTCGAAGATTATGCATCAGAAGCAGCTCTGCTGAAAACTCTGCAGGGACAGCAGAGTTTGAGTCAGAGAGTTCCATCCAACTTCCAGAAGAATCATCTTCTTTAATATCTACTCTCAACGTCGAAAGAGCTCTCCGTGGCATACCTATTACAGATGTAGATCATTATGGTAGACTCGGCATTCCAAGAGGATGTCCCTATGAAATGGTGCCAGTTGCATATAATAGTAAGGTTCGAGAATTGGAGAGTCAAGGTTTAGAGGAAGACATACTCAAGAAGAAATTGGAACTTCTCAGAGAATCGTACACTATCATGTCATCGCCGGATGAAAGAAGAATGTATGACTGGAGTTTGGCAAGAGAAGGTAACACAGAAAAATTCATTTGGCCTTATGAGGTTGATGTTTCTGAGCTTCAAAAAGGAGATCCTCCACCACAGGAACCTGAGGATGTTGGACCAACCAGACTGGTTGGATACTTCCTACTGGCATGGATAGTGCTGGCAATTGTGTTATCAATTGGACTAAACTTATAG 651 0.4147 MALSSATTTTVCIPCNNILPRTQPSKLIFSTNIVFSVKLPRRLCIRSSSAENSAGTAEFESESSIQLPEESSSLISTLNVERALRGIPITDVDHYGRLGIPRGCPYEMVPVAYNSKVRELESQGLEEDILKKKLELLRESYTIMSSPDERRMYDWSLAREGNTEKFIWPYEVDVSELQKGDPPPQEPEDVGPTRLVGYFLLAWIVLAIVLSIGLNL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05048 216 FunFam NAD(P)H-quinone oxidoreductase subunit U chloroplastic 75 166 - -
Trre5g05048 216 Gene3D DnaJ domain 89 156 IPR036869 -
Trre5g05048 216 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC 1 215 IPR044199 GO:0009535|GO:0010598
Trre5g05048 216 SUPERFAMILY Chaperone J-domain 91 158 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05048 Trre-Chr5 51916749 51917825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05048 K23052 - gmx:100793741 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05048 5 51916749 51917825 Trre5g05048 5 51916749 51917825 ECH