Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05036 ATGTCTTCTTCATCACTCATCAATTCAGAACTCGCACGTTCACCAAATGCAATTCCCATGCCAATTCCACCTCTCACTAACTTCAAAATCGGTCTCTGTCAACTTTCTGTCACTTCCGATAAAGCCATAAACATCGCACACGCTCGTACTGCTATTCAAGACGCTGCTTCAAAGGGTGCTAAACTCGTTCTTTTACCCGAAATTTGGAATAGTCCTTATTCAAATGCTAGTTTTCCTGTTTATGCTGAGGATATTGATGCTGGTGGTGATGCTTCACCTTCTACTGCTATGCTTTCTGAACTCTCTCGTTTATTGAATATCACTATCGTTGGTGGTTCTATTCCTGAACGTTCTGGTGATCGTTTGTATAATACTTGTTGTGTTTTTGGCACTGATGGAAAACTCAAAGCTAAACACCGTAAGATACATCTTTTTGATATTGACATCCCTGGGAAGATTACCTTTATTGAATCAGAGACTCTTACTGCTGGGGAGACTCCAACAATTGTTGACACAGAGGTTGGACGCATTGGCATAGGCATCTGTTATGACATTAGGTTTCCCGAACTAGCAATGATATATGCTGCAAGAGGGGCTCACTTGCTCTGCTATCCTGGGGCTTTTAACATGACAACTGGACCATTGCATTGGGAATTATTGCAGAGGGCAAGGGCTACAGATAATCAGTTATATGTGGCAACCTGTTCACCTGCTCGGGATACTGGATCTGATTATATAGCCTGGGGTCACTCCACTCTTGTTGGTCCATTTGGAGAAGTTCTGGCTACTACAGAACATGAGGAGGCAATAATTATAGCAGAAATTGATTATTCCATATTGGAGCAGAGAAGGACAAATCTCCCTGTGACTAAGCAACGGCGAGGTGATCTTTACCAATTGGTGGATTTGCAGAGGCTGAATTCCCACTGA 930 0.4269 MSSSSLINSELARSPNAIPMPIPPLTNFKIGLCQLSVTSDKAINIAHARTAIQDAASKGAKLVLLPEIWNSPYSNASFPVYAEDIDAGGDASPSTAMLSELSRLLNITIVGGSIPERSGDRLYNTCCVFGTDGKLKAKHRKIHLFDIDIPGKITFIESETLTAGETPTIVDTEVGRIGIGICYDIRFPELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDTGSDYIAWGHSTLVGPFGEVLATTEHEEAIIIAEIDYSILEQRRTNLPVTKQRRGDLYQLVDLQRLNSH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05036 309 CDD nit 29 294 IPR045254 GO:0016811
Trre5g05036 309 ProSitePatterns Uncharacterized protein family UPF0012 signature. 178 198 IPR001110 -
Trre5g05036 309 Gene3D - 26 303 IPR036526 -
Trre5g05036 309 PANTHER NITRILASE-RELATED 11 301 - -
Trre5g05036 309 Pfam Carbon-nitrogen hydrolase 30 280 IPR003010 GO:0006807
Trre5g05036 309 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 28 277 IPR003010 GO:0006807
Trre5g05036 309 SUPERFAMILY Carbon-nitrogen hydrolase 21 294 IPR036526 -
Trre5g05036 309 FunFam Omega-amidase chloroplastic 25 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05036 Trre-Chr5 51843359 51847478 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05036 K13566 - gmx:100817195 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05036 5 51843359 51847478 Trre5g05036 5 51843359 51847478 ECH