Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05030 ATGGATTTCAGGCTAATGGGTTTGGATTCACCACTTTTGAACACACTGCATCACATAATGGACCTCACAGATGACACAACAGAGAAGAATCTAAACGCACCAACACGAACCTACGTTCGCGATGCAAAAGCAATGGCAGCAACACCTGCAGATGTGAAGGAATATCCAAATTCATATGTCTTTGTGGTTGACATGCCAGGGTTGAAATCTGGTGACATTAAGGTTCAGGTTGAAGATGACAATGTGCTTTTGATAAGTGGTGAAAGGAAAAGAGAAGAAGAGAAAGAAGGTGCTAAGTATTTGAAAATGGAAAGAAGAGTTGGTAAGTTTATGAGGAAATTTGTTTTACCTGAGAATGCTAATGTTGAAGGTGTTTCTGCTATTTGTCAAGATGGTGTTTTAACTGTTACTGTTAATAAGTTGCCTCCTCCTGAACCTAAGAAGCCTAAGACTATTGAGGTTAAAATTGCATGA 474 0.3903 MDFRLMGLDSPLLNTLHHIMDLTDDTTEKNLNAPTRTYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKEGAKYLKMERRVGKFMRKFVLPENANVEGVSAICQDGVLTVTVNKLPPPEPKKPKTIEVKIA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05030 157 FunFam 17.3 kDa class II heat shock protein-like 11 156 - -
Trre5g05030 157 Gene3D - 10 156 IPR008978 -
Trre5g05030 157 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Trre5g05030 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 157 IPR002068 -
Trre5g05030 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 12 155 IPR031107 -
Trre5g05030 157 SUPERFAMILY HSP20-like chaperones 29 149 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05030 Trre-Chr5 51833230 51833703 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05030 K13993 - gmx:111605749 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05030 5 51833230 51833703 Trre5g05030 5 51833230 51833703 ECH