Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05029 ATGAGAATGAAAAGTATGAGGAAGAAGAAGAAGAGTGGTGCCACTGGTGGTGCCGGCGGCGAAGAAAATGAAGTAAAAACGGCCAAGTTAAAAGGAGCGGAAAGGTCAGCGTATTTTGCACGGAGAGAAGCAGCGAAGATATTGAGAAGTGTTCTTGAAGGAGATGCTAAACGCCGTGCACTTGCTTCTATCAAAACCCTCGTTTATCATCCTTCTGTTAGAAACAAGAAAGCCACTTTTGCTCTCATATGTCAAACCCTCAAACATCTTCCCATTATCAATGATGTTTTGAAATCTGCTTCTATTCTCAATACCAAGTGGAAGAGGCAACAAGAATTGGTCTATATAATTGTCTATGATATTCTTTTCGGCCAGGCAGTTCCGCTGGTTGGTGATGCAGAGAAGTATCTCATGCGCCACAAGGACGCACTACATTTACATTTGAAAAAGATTCTGTCACGGAGAAATGTGATGACTGTTAAAGAGTTGTTTGCTCTACATGAGGTTCCTGATGTTTCTGTACCTAGAAATGTTCGTGTGAATACGCTTAAACTTGATGTTGATTCAGCTGTAGTTGAACTTCGGAAAGAATACTCGGTTGAAAAGGATGATTTACTGCCCGACTTGCTGATACTCCCTCCAGGAACTGATTTACATGATCATCCTCTTGTCAAGAACGGAAGCATATTTCTCCAAGGTAAGGCGAGTTCCATGGTGGCACCGGCTCTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCATGCGCAGCACCAGGCAACAAAACTGTCCACCTTGCAGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTGAATAAAGAAAGGATTAAGCGCTTGAACGACACTATAAAGCTATCTGGGGCTTCCAACATACAGGTTCTCAACGAGGATTTCTTGAACATAAATCCCAAGGATCCTTCCTATTCTAAGGTAAAAGCTATTCTTTTGGATCCTTCCTGCTCAGGTTCTGGTACTGCCGCTTCTAGACTAGACCATCTGCTCCCATCTAAAGTAGCAGGTCAGGATATTGATATGGAAAGATTGAACAAGCTTGCTGCTTTTCAGAGAAAAGCTCTTCAGCATGCCTTCCTTTTTCCAGCTTTGGAAAGAGTTGTGTACAGTACATGTTCAATAAACCAAACTGAGAATGAAGATGTTGTGAAATCAGTTCTGCCCATAGCGGAGTCATATGGATTCCAACTGGCAAAACCCTTTCCCGAATGGCAGTGTCGTGGTCTTCCGGTGTTTGAAGGCTCTGAAAACCTTGTTCGGACAGATCCTGCCAAGCATGGCGAGGGTTTCTTCATTGCGTTGTTTGCCAAGAAAGACGCTAACCTTTCAGAGAGGTCAGATAAAAATGATAATAGGACTCTTCATGGTTCTACCAAAACTAGATATGTGCGAAGAAGGAAACCAATGTTAGTTCACACTAATCTGTTCAGAATGTGGTTATATGGTCAACTGAACCAGCGTCGAACACTAGACAAGTCCTATAGCAGTTCAAATCCGAGCGATAATAGAGCTGTCTAA 1557 0.4303 MRMKSMRKKKKSGATGGAGGEENEVKTAKLKGAERSAYFARREAAKILRSVLEGDAKRRALASIKTLVYHPSVRNKKATFALICQTLKHLPIINDVLKSASILNTKWKRQQELVYIIVYDILFGQAVPLVGDAEKYLMRHKDALHLHLKKILSRRNVMTVKELFALHEVPDVSVPRNVRVNTLKLDVDSAVVELRKEYSVEKDDLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELNKERIKRLNDTIKLSGASNIQVLNEDFLNINPKDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKVAGQDIDMERLNKLAAFQRKALQHAFLFPALERVVYSTCSINQTENEDVVKSVLPIAESYGFQLAKPFPEWQCRGLPVFEGSENLVRTDPAKHGEGFFIALFAKKDANLSERSDKNDNRTLHGSTKTRYVRRRKPMLVHTNLFRMWLYGQLNQRRTLDKSYSSSNPSDNRAV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05029 518 PRINTS RNA (C5-cytosine) methyltransferase signature 252 262 IPR023267 GO:0001510
Trre5g05029 518 PRINTS RNA (C5-cytosine) methyltransferase signature 433 450 IPR023267 GO:0001510
Trre5g05029 518 PRINTS RNA (C5-cytosine) methyltransferase signature 377 393 IPR023267 GO:0001510
Trre5g05029 518 PRINTS RNA (C5-cytosine) methyltransferase signature 321 333 IPR023267 GO:0001510
Trre5g05029 518 PRINTS RNA (C5-cytosine) methyltransferase signature 223 237 IPR023267 GO:0001510
Trre5g05029 518 CDD AdoMet_MTases 251 339 - -
Trre5g05029 518 Pfam 16S rRNA methyltransferase RsmB/F 242 448 IPR001678 GO:0008168
Trre5g05029 518 MobiDBLite consensus disorder prediction 1 27 - -
Trre5g05029 518 Gene3D Vaccinia Virus protein VP39 232 457 IPR029063 -
Trre5g05029 518 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 166 451 IPR001678 GO:0008168
Trre5g05029 518 FunFam Methyltransferase NSUN5, putative 232 456 - -
Trre5g05029 518 Gene3D Sun protein; domain 3 167 231 - -
Trre5g05029 518 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 176 451 IPR029063 -
Trre5g05029 518 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 48 451 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05029 Trre-Chr5 51827501 51832179 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05029 K15264 - gmx:100811850 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05029 5 51827501 51832179 Trre5g05029 5 51827501 51832179 ECH