Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05016 ATGGATTCTTCTCAAGGTTCTACGTTGGCTGGTTTGGTTAATAATGCATCTATTCAGAGAGATGAATCTAGAATCGATCGTGTTCCTGTTTATGTTAAGGAGCTAGTTGCTGGTGGATTTGCCGAACGGGTTAAGATACTTTGGCAGACAAGGACTGGAGGATTCCATAATCTTGGTGTGTACCAGTCTATGAATAAGTTGCTTAAGCATGAAGGTTTTCTAGGATTATATAAAGGAAATGGAGCCAGTGTTATTCGGATTGTTCCATATGCAGCCTTGCATTTTATGACATACGAGCGGTATAAAAGTTGGATCCTGGACAATTATCCCATGTTAGGAACGGGTCCTTCTATCGATCTTTTAGCTGGCTCAGCAGCTGGGGGAACTTCAGTTTTATGTACATACCCCTTAGATCTTGCTCGTACTAAACTTGCTTATCAGGTGGTGGACACAAAAGGATGTATCAAAGATGGTATAAAAGCAGTTCATTCCCAACCTGTAGGTCCTGCACATAATGGGATTAAAGGTGTACTTACAAGTGCCTATAAGGAAGCTGGAGTTCGTGGACTTTATAGAGGTGTAGGTCCAACCCTTACTGGAATTCTTCCATATGCCGGTTTAAAGTTTTATACGTATGAGAAGTTGAAGATGCATGTTCCTGAAGAACATCAGAAGTCCATTTTGATGCGCCTTTCTTGTGGAGCTCTTGCTGGATTGTTCGGGCAGACTTTAACATACCCTTTGGATGTTGTTAAGAGACAAATGCAGGTTGGGAGCCTTCAAAATGCAGCTAACAGCGATGCCAGATACAGGAATACATTTGATGGACTTAGGAAGATTGTTCGAAATCAAGGGTGGAAGCAGTTGTTTGCAGGCGTGAGCATTAACTATATAAGGATTGTTCCGTCAGCTGCAATTAGCTTCACCACATATGACATGATGAAGGCTTGGCTTGGCGTACCACCCCAACAAAAGTCTCGATCAGTTTCAGCAGGATAA 999 0.4224 MDSSQGSTLAGLVNNASIQRDESRIDRVPVYVKELVAGGFAERVKILWQTRTGGFHNLGVYQSMNKLLKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILDNYPMLGTGPSIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVVDTKGCIKDGIKAVHSQPVGPAHNGIKGVLTSAYKEAGVRGLYRGVGPTLTGILPYAGLKFYTYEKLKMHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAANSDARYRNTFDGLRKIVRNQGWKQLFAGVSINYIRIVPSAAISFTTYDMMKAWLGVPPQQKSRSVSAG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05016 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 218 IPR018108 -
Trre5g05016 332 Pfam Mitochondrial carrier protein 42 108 IPR018108 -
Trre5g05016 332 Pfam Mitochondrial carrier protein 225 318 IPR018108 -
Trre5g05016 332 Pfam Mitochondrial carrier protein 118 219 IPR018108 -
Trre5g05016 332 PANTHER SOLUTE CARRIER FAMILY 25 41 320 - -
Trre5g05016 332 SUPERFAMILY Mitochondrial carrier 34 313 IPR023395 -
Trre5g05016 332 PRINTS Mitochondrial carrier protein signature 79 99 IPR002067 GO:0055085
Trre5g05016 332 PRINTS Mitochondrial carrier protein signature 36 50 IPR002067 GO:0055085
Trre5g05016 332 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085
Trre5g05016 332 PRINTS Mitochondrial carrier protein signature 129 147 IPR002067 GO:0055085
Trre5g05016 332 PRINTS Mitochondrial carrier protein signature 234 256 IPR002067 GO:0055085
Trre5g05016 332 Gene3D Mitochondrial carrier domain 29 319 IPR023395 -
Trre5g05016 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 317 IPR018108 -
Trre5g05016 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 104 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05016 Trre-Chr5 51720761 51724058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05016 96 327 Organic Solute Cotransporters AT1G14560 66.239 1.11e-112 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05016 - - gmx:100784421 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05016 5 51720761 51724058 Trre5g05016 5 51720761 51724058 ECH