Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05006 ATGACCGAACCTTCTTCCAAACCCAACGGAAACGGCGCAGTTAACGGTGCAATTAACGGCGCCGCTACTACTAACGGTAACGGAAATCCAGCTCCCGTGAAATCTCAACTTTACAATCCAAATCGTCAAGTTTACCGTCCTCAATCTCAATACAACCGTCGCCGTCGATCTAACCGTAGTCTCTGCTGTTGCTGCTGTTTCTGGACAATTCTCACCGTTCTCGCCGTCGCACTTCTCGTTGCTATTGTCGGTGCTGGACTCTACGTACTGTACCATCCTCATCAACCACAATTCTCCATTACTAATCTCCGCATTGTGAAAATGAATCTCAAAACCTCAACAGATTCACCTTCACATCTCACTACACTTTTCAATCTCACACTCATCGCTAAAAACCCTAACAATCACCTCGTTTTCTTCTACGAGCCTTTCACTGTTACTGCTTTCTCTGATTCAGTTCAAATCGGTAACGGATCGTTGCCGGCGTTTAATTCTGATAAGAATAACCAAACAAGTCTCCGGTCAGTGCTTTCGAATTCACAAGATCTGGATACGGAATCGTTGACTAGTTTGAGATCGGGTTTGAAGAGAAAGAAAGGTTTTCCGGTGGTGATTCAAATGGATACGAAGGTGAAGATGAAGATGGAATGGTTGAAGAGTAAGAAGGTTGGAATAAGAGTGACGTGTGAAGGAATTAGAGGAACTGTTCCCGCCGGTAAGTCGCCGTCGGTGGCTTCTGTAATCGACTCGGAATGTAAGGTGGATCTTCGAATCAAGATCTGGAAATTCTCCTTTTAG 798 0.4486 MTEPSSKPNGNGAVNGAINGAATTNGNGNPAPVKSQLYNPNRQVYRPQSQYNRRRRSNRSLCCCCCFWTILTVLAVALLVAIVGAGLYVLYHPHQPQFSITNLRIVKMNLKTSTDSPSHLTTLFNLTLIAKNPNNHLVFFYEPFTVTAFSDSVQIGNGSLPAFNSDKNNQTSLRSVLSNSQDLDTESLTSLRSGLKRKKGFPVVIQMDTKVKMKMEWLKSKKVGIRVTCEGIRGTVPAGKSPSVASVIDSECKVDLRIKIWKFSF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05006 265 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 28 253 - -
Trre5g05006 265 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05006 Trre-Chr5 51626744 51627541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05006 30 258 EF-hand Containing Proteins AT5G21130 26.471 1.72e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05006 - - tpra:123894238 456.832