Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05001 ATGGCTTTTCTAACTCGAACATCTTCACGTTTCTCTCAATTAGCATCACCTCAACGTGTAGTTTCTCTCCACACAACCCTCCCTTCTCTATCTTCAACAACACCTACACCATATGCTCCACCGCCACCTCCATCGGCTTCTTCTCCCGTCGGCCTTTCCAAACCTGCCGAGTATGTTATCTCTAAGGTTGATGATCTCATGAATTGGGCTCGTCGTGGTTCAATTTGGCCTATGACTTTTGGACTCGCTTGTTGTGCTGTTGAAATGATGCATACTGGTGCTGCTCGTTACGATCTGGATCGATTTGGTATCATTTTCAGACCTAGTCCTCGTCAATCTGATTGTATGATTGTTGCTGGTACTCTTACCAACAAGATGGCACCTGCTCTTCGCAAGGTTTATGACCAAATGCCCGAGCCTAGATGGGTTGTTTCCATGGGAAGTTGTGCTAATGGAGGAGGATACTACCACTACTCTTACTCAGTTGTTCGGGGATGTGACAGGATAGTTCCTGTTGATATTTATGTTCCAGGCTGCCCTCCAACTGCTGAGGCTTTACTGTATGGACTCCTCCAACTGCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCCATTGGTGGACACAGTGA 630 0.4683 MAFLTRTSSRFSQLASPQRVVSLHTTLPSLSSTTPTPYAPPPPPSASSPVGLSKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05001 209 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 50 198 IPR006138 GO:0008137|GO:0048038|GO:0051539
Trre5g05001 209 PANTHER NADH DEHYDROGENASE 53 208 - -
Trre5g05001 209 MobiDBLite consensus disorder prediction 31 51 - -
Trre5g05001 209 MobiDBLite consensus disorder prediction 34 49 - -
Trre5g05001 209 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 84 193 IPR006137 GO:0051536
Trre5g05001 209 FunFam NADH-quinone oxidoreductase subunit B 2 51 209 - -
Trre5g05001 209 NCBIfam NADH-quinone oxidoreductase subunit B 59 199 IPR006138 GO:0008137|GO:0048038|GO:0051539
Trre5g05001 209 SUPERFAMILY HydA/Nqo6-like 57 201 - -
Trre5g05001 209 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 165 181 IPR006138 GO:0008137|GO:0048038|GO:0051539
Trre5g05001 209 Gene3D - 55 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05001 Trre-Chr5 51571950 51575483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05001 K03940 - gmx:100802267 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05001 5 51571950 51575483 Trre5g05001 5 51571950 51575483 ECH