Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05000 ATGGCGGAAGAAGCACAGTATACCCTAAAACGCAAATACGACGACCAACCCACCGCCATCGACATCAAACTCGAAGTCGCCAACGCCAAACAAAAAGCTCAAGAAGCCGCCGCTCGTCTTCTCAATGCCACCGCCGCTCCACCACTTCCCTTCGATCCCAAACGAACTAAATCTGATAATGGTGCTCCACAATCTGGATTCGATTCTTATGATTTGAAACCTCAATACTCAACAGCTTCTTATGGTTCTAGTAAGAAGATCGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAAGTGGTGAAACTATTAAGTATCTTCAGTTGCAATCTGGTGCTAAAATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTACTATGAGGATGGTTGAACTTACTGGTACTTCTGATGCTGTTGCTTCTGCTGAGAAACTCATCAATGATGTTCTTGCTGAGGCTGAAGCTGGGGGTACTGGTGGTGGTACTAGGCGGATGGCTGCACAATCTGGGGGTGATGAATTTGCGATGCAAATACCAAACAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACGATAAAGAGCATGCAAGCTTCAACTGGAGCTCGGATTCAGGTGATACCTTTGCATCTTCCCCCGGGTGATACATCAACAGAAAGAACATTAAAAATTAATGGGGCCCCTGAGCAAATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCTGGTGGTTATACTCAGCAAGGTTACCAATCCCGACCACCATCTAGCTGGGCTCCTCCTGCTGCTCCCGCACAACAACCTGGTTATGGCTATGCGCAACCTGGATCATACTCTGGTCCACCACCTCAGTATAACATGCCTCAGCCCCCATACACTGGCTACCCTCCCCAGCAAGCTGGCGGATACTCTGCCAATTGGGACCAGTCCACTGTACCATCACACCAGCAGTCTACTCATGCAAGTGGTTATGATTATTACAATCAACAACCCCAGCAACAGCAAAATCCTGGGGTCCCTGCACAGCCAGCTGATGGGTCTACTTACAATTACAGTCAGCCCCCTTCCTCTGGCTACACTCAACTGGGACAGGGTTATGGTCAGGAAAGCTATGGTGCATATAATGCGCAACAACAATCAGGATATGCTCAGCCACAAACATATGAGCAGCAACAAGGTTATGGCTCAGCTCCCAGCTATGGCAGTGGGAGTAACCCAACTCAAGAAGGGCACACTTCCAACTATGGATCACAAGGAGATTCAACCCAAACTTCCCAACCCTCTACCGTTCCCCAGCAAGGCTATGCTACCACCAACCAACAAGGAACTCCTCAACCAGGTTATGGGATTGCTCCTACCTCGCAAGCTACCTATGGCAATCAACCACAGTCTGGTTATGGACCTGGTTATGGTGCCCCTCCATCTCAAAAGCCAAGTGGAACTCCACCTGTTTATGGTCAATCACAGTCGCCTAGCACAGCAGGAGGCTATGGTCAGTCAGCATATTCTACCCAGCCCCCACCTTCTGGTTATGCTCAGCCAGAGTTAGGAACTCAGAGAGCACCAGTACAACCAGGGTATGGTTCTCAATCATATGGTGCTCCTCAAGGTGGCCAACCTGGCTACGGCCAGACTCCACCATCATATGGAAACAGTTCTTATGGTGCTGGTTATACTCAGGCTCCAGCATATGCTAGTGATGGAGCAACTGCACAGGCTATTCAACAGGGTGGTGTTGCTAAAGTGTCCCCCAAGAGTTAA 1809 0.4804 MAEEAQYTLKRKYDDQPTAIDIKLEVANAKQKAQEAAARLLNATAAPPLPFDPKRTKSDNGAPQSGFDSYDLKPQYSTASYGSSKKIEIPNGRVGVLIGKSGETIKYLQLQSGAKIQVTRDMDADPNSTMRMVELTGTSDAVASAEKLINDVLAEAEAGGTGGGTRRMAAQSGGDEFAMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHLPPGDTSTERTLKINGAPEQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPAQQPGYGYAQPGSYSGPPPQYNMPQPPYTGYPPQQAGGYSANWDQSTVPSHQQSTHASGYDYYNQQPQQQQNPGVPAQPADGSTYNYSQPPSSGYTQLGQGYGQESYGAYNAQQQSGYAQPQTYEQQQGYGSAPSYGSGSNPTQEGHTSNYGSQGDSTQTSQPSTVPQQGYATTNQQGTPQPGYGIAPTSQATYGNQPQSGYGPGYGAPPSQKPSGTPPVYGQSQSPSTAGGYGQSAYSTQPPPSGYAQPELGTQRAPVQPGYGSQSYGAPQGGQPGYGQTPPSYGNSSYGAGYTQAPAYASDGATAQAIQQGGVAKVSPKS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05000 602 MobiDBLite consensus disorder prediction 250 271 - -
Trre5g05000 602 MobiDBLite consensus disorder prediction 539 577 - -
Trre5g05000 602 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 248 IPR036612 GO:0003723
Trre5g05000 602 ProSiteProfiles Type-1 KH domain profile. 174 242 - -
Trre5g05000 602 MobiDBLite consensus disorder prediction 250 577 - -
Trre5g05000 602 Coils Coil 19 46 - -
Trre5g05000 602 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 85 161 IPR036612 GO:0003723
Trre5g05000 602 Gene3D K Homology domain, type 1 76 171 IPR036612 GO:0003723
Trre5g05000 602 Gene3D K Homology domain, type 1 172 270 IPR036612 GO:0003723
Trre5g05000 602 Pfam KH domain 85 151 IPR004088 GO:0003723
Trre5g05000 602 Pfam KH domain 179 243 IPR004088 GO:0003723
Trre5g05000 602 MobiDBLite consensus disorder prediction 297 311 - -
Trre5g05000 602 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 70 438 - -
Trre5g05000 602 ProSiteProfiles Type-1 KH domain profile. 82 149 - -
Trre5g05000 602 MobiDBLite consensus disorder prediction 44 73 - -
Trre5g05000 602 FunFam KH domain-containing protein 170 270 - -
Trre5g05000 602 MobiDBLite consensus disorder prediction 315 480 - -
Trre5g05000 602 MobiDBLite consensus disorder prediction 58 73 - -
Trre5g05000 602 SMART kh_6 81 154 IPR004087 GO:0003676
Trre5g05000 602 SMART kh_6 173 247 IPR004087 GO:0003676
Trre5g05000 602 CDD KH-I 85 150 - -
Trre5g05000 602 MobiDBLite consensus disorder prediction 497 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05000 Trre-Chr5 51565489 51569348 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05000 K13210 - gmx:100813135 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05000 5 51565489 51569348 Trre5g05000 5 51565489 51569348 ECH