Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04964 ATGATTCAAAGAACTCTGAATTTTCCGAGTTTAACCAAATTTCTTCTTCAACCTGGTTATCTGTCTTCCCTTAAGATAGGGGCTTACAATGGATATACATCTCAGCCCTCCCCTCTTCCAATTCCAGACTCAACTTTAAGCGATGAAGATGAGTACGCTAATGTAGATTGGGACAACCTTGGATTTGGGCTCATGCCAACTGATTTCATGTACGTAACAAAATGTTGCGCGGGCCAAAATTTTGGACATGGACAACTCAATCGATATGGTAACATTGAACTTAGCCCTTCTGCTGGGGTCCTAAATTATGGTCAGGGATTATTTGAAGGAACCAAAGCATACAGAAATGAAAATGGGAAACTGATGCTATTCCGTCCAGAAGAAAATGCAATTCGCATGAAGATTGGTGCTGAAAGAATGTGCATGACTGCTCCTTCCATTGATCAATTTGTTGATGCTCTGAAGCAAACCGCTCTAGCAAATAAGCGCTGGGTTCCTCCGCCGGGCAAAGGATCGTTGTACCTTAGGCCTCTACTAATAGGAAGTGGTCCGGTTCTTGGTTTGGCACCAGCACCTGAATATACATTCCTCATATATGCTTCCCCTGTTCGCAACTATTTCAAGGAAGGTTCAGCGCCGCTTAACTTATATGTGGAAGAAGATTTTGACCGTGCTTCTCGACGTGGAACTGGAAGCGTTAAAACCATTTCCAATTATGCACCGGTTTTGATGGCACAAAGTATAGCCAAGAGCAGAGGATTTTCTGATGTGTTATATCTTGATTCGGACAACAAAAAAAATCTAGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGAAAAACTATCTCAACACCCGCTATCAACGGAACCATACTTTCGGGAATCACCAGAAAAAGTGTCATCGAAATCGCCAGTGATTTGGGTTATAAGGTGGAAGAGCGTGTTGTTGCTGTCGATGAATTGGCTGAGGCGGATGAAGTTTTCTGTACAGGAACTGCCGTTGGTGTTGCCCCTGTAGGAAGTATCACATACCGGAATAGAAGGGTGGACTATAAAACAGGCTCTGGAACCATTTGTGAGAAGCTGTGCAGTACCATTTTAGGATTACAAACTGGTAATATTGAAGATAAGAAGGGATGGATAGTTGAATTTGATTAA 1164 0.4244 MIQRTLNFPSLTKFLLQPGYLSSLKIGAYNGYTSQPSPLPIPDSTLSDEDEYANVDWDNLGFGLMPTDFMYVTKCCAGQNFGHGQLNRYGNIELSPSAGVLNYGQGLFEGTKAYRNENGKLMLFRPEENAIRMKIGAERMCMTAPSIDQFVDALKQTALANKRWVPPPGKGSLYLRPLLIGSGPVLGLAPAPEYTFLIYASPVRNYFKEGSAPLNLYVEEDFDRASRRGTGSVKTISNYAPVLMAQSIAKSRGFSDVLYLDSDNKKNLEEVSSCNIFIAKGKTISTPAINGTILSGITRKSVIEIASDLGYKVEERVVAVDELAEADEVFCTGTAVGVAPVGSITYRNRRVDYKTGSGTICEKLCSTILGLQTGNIEDKKGWIVEFD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04964 387 PIRSF BCAT1 39 387 IPR005786 GO:0004084|GO:0009081
Trre5g04964 387 PANTHER AMINO ACID AMINOTRANSFERASE 44 385 IPR005786 GO:0004084|GO:0009081
Trre5g04964 387 FunFam Branched-chain-amino-acid aminotransferase 215 386 - -
Trre5g04964 387 Gene3D - 32 214 IPR043131 -
Trre5g04964 387 Gene3D - 215 386 IPR043132 -
Trre5g04964 387 Pfam Amino-transferase class IV 106 344 IPR001544 GO:0003824
Trre5g04964 387 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 45 383 IPR036038 GO:0003824
Trre5g04964 387 CDD BCAT_beta_family 93 374 IPR033939 GO:0004084|GO:0009081
Trre5g04964 387 ProSitePatterns Aminotransferases class-IV signature. 270 299 IPR018300 GO:0003824
Trre5g04964 387 FunFam Branched-chain-amino-acid aminotransferase 40 213 - -
Trre5g04964 387 NCBIfam branched-chain-amino-acid transaminase 83 385 IPR005786 GO:0004084|GO:0009081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04964 Trre-Chr5 51339768 51344549 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04964 K00826 - gmx:100782644 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04964 5 51339768 51344549 Trre5g04964 5 51339768 51344549 ECH