Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04961 ATGGGGCTTGCGGAGAATCAGCTTTCATTTGACCTTGTTGAATCATGGCTCCAAAGAAATTCTGATGTTGTGGAGATGAAGAAAGATGGAATATCCATATTTAAAGAACTCGCTCTTTTCCAGGATTATCATGGCTTACCTGCTCTCAAAAATGAACTGGTGGACTTCATGGGAAAAATCAGAGGAAATAGAATAAAATTCGATTCAAAGAATCTTGTTCTCACAGCTGGCGCAACTTCCGCAAATGAAATTCTCATGTTTTGTCTCGCCGATCCAGGGGAAGCTTTCATTCTTCCCACACCCTACTATCCTGGGTTTAACAGAGATCTTAAATGGAGAACAGGAGTTGAAATCGTTCCAATGCATTGCTTAAGTTCAAACGGTTTCAGAATCACATCCTCTGGTTTAGAACAAGCCTACGAAGAAGCACAAAACAAAAATCTTAATGTCAAAGGGGTACTAATAACTAATCCTTCAAACCCATTAGGCACAACTATGACCAAAAAAGAGCTTATCAAACTAGTAGATTTTGCAATAAACAAAAACATTCACATAATAAGCGATGAAATCTACTCAGGTACTGTCTTCGACTCACCAAACTTCGTAAGCATCATGGAAGTTATCAACGAAAGAAGTCTCAAAAATGATGAAATTTCGAAGCATGTTCACGTTATTTATAGTCTCTCTAAAGACCTCGGTGTACCTGGTTTTCGTGTTGGAATGATATATTCAAATAACAAAAATGTTGTATCTGCAGCGACCAAAATGTCAAGTTTTGGACTTATTTCGTCGCAAACTCAATATTTGGTAGCAAAATTACTAGGTGACAAGAAATTTATCGTTAAGTATATGGACGAGAATAAAAAGAGATTGAAGAAACGAAAGGAAATGGTCGTTAATGGTTTGAGAAATGCGGGGATTCAGTGTTTAAAGAGCAATGCTGGTTTGTTCTGTTGGGTTGATATGAGACATTTGTTGAGTTCTTCAAGTTTTGAGGCAGAGAAAGAGCTTTGGAAAATGATTATTTACAAAGTTGGTTTGAATATATCTCCTGGCTCTTCATGTAATTGTTCTGAACCAGGGTGGTTTAGGATTTGTTTTGCTAATATGACTCAAGAAACTTTAGAAGTTGCAATGCAAAGGATTAAGGTTTTTATGGATTCATATTCAACCATGTTTTGTGTCAAACAACCATTATTTGTCACTAATAATAATATGATCAATTACTATAAGTACACTAGATGGATGGGAAATTACTAA 1260 0.3603 MGLAENQLSFDLVESWLQRNSDVVEMKKDGISIFKELALFQDYHGLPALKNELVDFMGKIRGNRIKFDSKNLVLTAGATSANEILMFCLADPGEAFILPTPYYPGFNRDLKWRTGVEIVPMHCLSSNGFRITSSGLEQAYEEAQNKNLNVKGVLITNPSNPLGTTMTKKELIKLVDFAINKNIHIISDEIYSGTVFDSPNFVSIMEVINERSLKNDEISKHVHVIYSLSKDLGVPGFRVGMIYSNNKNVVSAATKMSSFGLISSQTQYLVAKLLGDKKFIVKYMDENKKRLKKRKEMVVNGLRNAGIQCLKSNAGLFCWVDMRHLLSSSSFEAEKELWKMIIYKVGLNISPGSSCNCSEPGWFRICFANMTQETLEVAMQRIKVFMDSYSTMFCVKQPLFVTNNNMINYYKYTRWMGNY 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04961 419 Pfam Aminotransferase class I and II 1 382 IPR004839 GO:0009058|GO:0030170
Trre5g04961 419 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 384 - -
Trre5g04961 419 Gene3D Aspartate Aminotransferase, domain 1 1 381 IPR015422 GO:0003824
Trre5g04961 419 FunFam 1-aminocyclopropane-1-carboxylate synthase 2 249 381 - -
Trre5g04961 419 SUPERFAMILY PLP-dependent transferases 1 387 IPR015424 -
Trre5g04961 419 CDD AAT_like 40 383 - -
Trre5g04961 419 FunFam 1-aminocyclopropane-1-carboxylate synthase 3 21 276 - -
Trre5g04961 419 Gene3D - 21 276 IPR015421 GO:0003824
Trre5g04961 419 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 183 206 - -
Trre5g04961 419 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 276 - -
Trre5g04961 419 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 147 171 - -
Trre5g04961 419 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 221 245 - -
Trre5g04961 419 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 34 50 - -
Trre5g04961 419 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 1 24 - -
Trre5g04961 419 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 71 91 - -
Trre5g04961 419 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 93 114 - -
Trre5g04961 419 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 227 240 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04961 Trre-Chr5 51310586 51313814 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04961 K01762 - gmx:100803507 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04961 5 51310586 51313814 Trre5g04961 5 51310586 51313814 ECH