Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04958 ATGGCAGCGTTGTTCAATTGGGGTGTGAAGGATAGTCATAGAGGAACACCAGTTGTTGTAAAAATGGAGAATCCAAATTGGTCCATGGTTGAACTTGAAGGACCTTCAGAAGAAGATTTACTCATAACAAACCCATCTTCAAGAGACAAAGGAAGAGGAAAGAACGCTAAACAACTCACTTGGGTTCTTCTCCTAAAAGCTCATAGAGCTGCTGGTTGTTTAACATCAATTGCTCCTGCATTGTTTGGTTTTGTTTCCGCCGTGAAACGCCGTGTGGCTTCGGGTAGAACAGACGCGGATATCGACGGTGTTGGTGTTGGTGGTGGTAGGGAAAATGAGAACCCTACCGTGAAAAGTTGGCATTTTAGTGCTCCACATCTTGAATTATGGGCACCAGCATTTGGGGTTAAGGATGTTTTTGATTGGTTTTATGCTAGATGGGTTTTGATTCGTGTTGAGTATCTTGCTCCTCCTTTACAATTCCTTACAAATGCTTGTATTGTTCTTTTCCTTATTCAGAGTGTGGATAGATTGGTTCTTTGTTTAGGTTGTTTTTGGATCAAGTTTAAGAAAATTAAACCTGTTCCTAAAGGTGGTCATGGTTTAGATCTTGAATCTGGAGACAAGGGTTTCTTTCCTATGGTACTTGTTCAGATCCCCATGTGCAATGAGAAAGAGGTTTATCAGCAATCTATTGCTGCAGTGTGTAATTTGGATTGGCCAAAATCCAAATTCTTGATTCAAGTTTTGGATGATTCCGATGACCCGGTAACATCATCATTGATTCAGGAGGAGGTTCATAAATGGCAACAAGAAGGTGCCAACATTGTGTACCGACACCGTGTGATTAGAGATGGTTACAAGGCTGGTAATCTGAAATCTGCCATGAATTGTAGTTATGTGAAAGATTATGAATTTGTTACGATTTTTGATGCCGACTTTCAGCCTACCCCTGATTTCCTTAAGAAAACTGTTCCTCATTTTAAGGATAATGACGAATTAGGACTTGTTCAAGCTAGATGGTCTTTTGTGAACAAGGATGAAAACCTTTTAACAAGGTTGCAGAATATTAATCTGTGTTTCCATTTTGAAGTTGAACAACAAGTGAATAGTGTTTTCATTAATTTCTTTGGGTTCAATGGTACTGCTGGAGTTTGGAGAATTAAAGCTTTGGAAGAATCTGGTGGTTGGTTGGAGAGGACCACTGTAGAGGACATGGATATTGCCGTTCGAGCTCATCTTCATGGATGGAAATTCATTTTCCTTAATGATGTTGAGTGCCAATGTGAGTTACCTGAATCTTATGAAGCTTACAGAAAACAGCAGCATAGATGGCATTCTGGGCCAATGCAATTGTTTCGTCTTTGTTTGCCTGATGTCATAAAGGCCAAGATAAGCATATGGAAGAAATTCAACATGATATTTCTCTTTTTCCTTCTTAGAAAACTAGTGTTGCCATTCTATTCATTCACCCTATTCTGCATAATTCTTCCCATGACAATGTTCGTACCAGAGGCCGAGATTCCTGCATGGGTCGTTTGTTACATCCCTGCTATCATGTCATTTCTCAACATTCTTCCAGCACCAAAAGCTTTTCCCTTCATTGTACCTTATCTCCTATTTGAGAACACCATGTCGGTTACAAAATTCAACGCCATGATCTCAGGTCTATTCCAGCTAGGAAGTGCGTACGAATGGGTAGTAACTAAGAAATCCGGCCGTTCTTCGGAGGGCGATCTAGTTTCATTGATTGAGAAACCAAAGCATCAAAGAGGGTCATCAGCACCTGATCTTGAGGAAATGAAAGAGGAAATTAGGAGACAAGAGGAAAATGTGTCTACGAAGAAGAAGAAAAAACATAACAAAATGTATATGAAGGAACTTGCTTTGGCTTGTTTACTTCTAACAGCTTCAGCAAGGAGTCTCCTTTCAGCTCAAGGAATTCACTTCTACTTCTTGCTATTCCAAGGAGTATCATTCCTTTTGGTTGGTCTAGACTTGATTGGTGAACAAGTAGACTGA 2022 0.4001 MAALFNWGVKDSHRGTPVVVKMENPNWSMVELEGPSEEDLLITNPSSRDKGRGKNAKQLTWVLLLKAHRAAGCLTSIAPALFGFVSAVKRRVASGRTDADIDGVGVGGGRENENPTVKSWHFSAPHLELWAPAFGVKDVFDWFYARWVLIRVEYLAPPLQFLTNACIVLFLIQSVDRLVLCLGCFWIKFKKIKPVPKGGHGLDLESGDKGFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKFLIQVLDDSDDPVTSSLIQEEVHKWQQEGANIVYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVTIFDADFQPTPDFLKKTVPHFKDNDELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNSVFINFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDVIKAKISIWKKFNMIFLFFLLRKLVLPFYSFTLFCIILPMTMFVPEAEIPAWVVCYIPAIMSFLNILPAPKAFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLIEKPKHQRGSSAPDLEEMKEEIRRQEENVSTKKKKKHNKMYMKELALACLLLTASARSLLSAQGIHFYFLLFQGVSFLLVGLDLIGEQVD 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04958 673 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 146 670 - -
Trre5g04958 673 SUPERFAMILY Nucleotide-diphospho-sugar transferases 215 491 IPR029044 -
Trre5g04958 673 MobiDBLite consensus disorder prediction 587 616 - -
Trre5g04958 673 FunFam probable xyloglucan glycosyltransferase 5 206 431 - -
Trre5g04958 673 Pfam Glycosyl transferase family group 2 307 502 IPR001173 -
Trre5g04958 673 Coils Coil 598 618 - -
Trre5g04958 673 MobiDBLite consensus disorder prediction 587 618 - -
Trre5g04958 673 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 206 430 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04958 Trre-Chr5 51263110 51266023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04958 1 673 Miscellaneous Gene Families AT4G07960 75.000 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04958 - - gmx:100805969 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04958 5 51263110 51266023 Trre5g04958 5 51263110 51266023 ECH