Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04948 ATGTCATCATGGCTCGCACGTTCCCTTGCTAACTCTCTTAGACTCGATGACGACATTCAAAACGACACCGTAACCGTTTCCTCACCCACAAATCAACATCAACACAATAATGCACTTATTAGATCACAATTAGAAGAAGAAGAACAACAATATGATGATGATGATGACGATGAAACGCAAGGTCGTGGTGGTGTTAAAGAAGACCTCGACGAAATCAAACAAACCCTAACCCGCCAATTTTGGGGTATGGCTTCATTTCTCGCTCCTCCACCAACAATTTCTCAATCCGATCACAATTTCCCTGAACAACAACAACAACAACAACATGTTGATGATGCTGTAATTTCAAATCAATCTTCGGATATGGAAAATGGTATTATCCGTGGGGATGATCCTGACCCGAATTCGAATACATTTGGATCCGATTCGGAACGGGAACAGGAGTTTGATATTCCATCCGCGGTTGGAATTACGGAGGAAGTGCTGACGTTTGCAATGAATATTGCTATGCATCCTGAGACGTGGTTGGATTTTCCTATTGATGAGGAAGATGATACCGATGATTTTTACATGTCCGATGCCCAACGAGATCATGCTGTGGTTGTTGAAAGATTTGCTCCGAGATTAGCTGCGCTTAGAATTGAACTTTGTCCTTGCCATATGAGTGAAAGTTACTTCTGGAAGGTCTATTTTGTACTTTTGCATTCAAGGCTTAATAAACAAGATTCTGAGATTTTGTCTACACCCCAGGTCATGGTAGCCAGAACAATATGGATGCAGGAATTGCAGAAACAAACTAAGCCCGAATATGAACTTTATGGAAGAAGTGATCTCTACTCAAGAGACAATGCTCAGCATCATGATTCTACTCCTAGCTTATTAGATGACACCTATTCTGATGACATCCCTCATCGGACATACGGAAATAGAACAACCTCTTCCTCTGTGGTGGCAGATAATGAGTCTGAAAAGTACACAGTCGAAAGTTCTGGATCACATTTCTCTGATAAGTCAATTACTGAGGAAAATCCAATCATTAAAACTGAAAACAAAGATCTAAAAAGTGGCCGACCATCTCAAATTATTATTCATGACTATGATGACGACGGAGACGATGATTGGCCAGAGGATGATTCTGATTTAGGAGGAACAACACTCCCTATTGTTAATGAAGAAGACATATCTTTCAGCGATCTTGAGGATGATGATTATGGCATTAAACACGTTAATACCAATTCAAGTTCAAAGGTGGTATAA 1257 0.4033 MSSWLARSLANSLRLDDDIQNDTVTVSSPTNQHQHNNALIRSQLEEEEQQYDDDDDDETQGRGGVKEDLDEIKQTLTRQFWGMASFLAPPPTISQSDHNFPEQQQQQQHVDDAVISNQSSDMENGIIRGDDPDPNSNTFGSDSEREQEFDIPSAVGITEEVLTFAMNIAMHPETWLDFPIDEEDDTDDFYMSDAQRDHAVVVERFAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKQDSEILSTPQVMVARTIWMQELQKQTKPEYELYGRSDLYSRDNAQHHDSTPSLLDDTYSDDIPHRTYGNRTTSSSVVADNESEKYTVESSGSHFSDKSITEENPIIKTENKDLKSGRPSQIIIHDYDDDGDDDWPEDDSDLGGTTLPIVNEEDISFSDLEDDDYGIKHVNTNSSSKVV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04948 418 Gene3D BSD domain 153 248 IPR035925 -
Trre5g04948 418 MobiDBLite consensus disorder prediction 46 69 - -
Trre5g04948 418 SUPERFAMILY BSD domain-like 156 242 IPR035925 -
Trre5g04948 418 PANTHER BSD DOMAIN-CONTAINING PROTEIN 3 404 - -
Trre5g04948 418 SMART wurzfinal6 186 238 IPR005607 -
Trre5g04948 418 MobiDBLite consensus disorder prediction 281 389 - -
Trre5g04948 418 Pfam BSD domain 186 242 IPR005607 -
Trre5g04948 418 MobiDBLite consensus disorder prediction 89 124 - -
Trre5g04948 418 MobiDBLite consensus disorder prediction 87 148 - -
Trre5g04948 418 MobiDBLite consensus disorder prediction 340 354 - -
Trre5g04948 418 MobiDBLite consensus disorder prediction 304 339 - -
Trre5g04948 418 ProSiteProfiles BSD domain profile. 186 238 IPR005607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04948 Trre-Chr5 51149844 51153433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04948 156 236 EF-hand Containing Proteins AT1G69030 30.769 3.98e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04948 - - lja:Lj1g3v1755620.1 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04948 5 51149844 51153433 Trre5g04948 5 51149844 51153433 ECH