Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04947 ATGCTATCATTAATATGTTGCACAAATAGCAACAACCTTAATCCAGTGATTCTAATACCAGGTAATGGAGGGAACCAACTAGAAGCAAAATTAACCAAACAATACAAACCTTCTACCTTAATTTGTGATCCATGGTATCCACCTTTCAAGAAGAAAAATGGTTGGTTTAGATTATGGTTTGATTCAAGTGTCTTACTTGCTCCATTCACTAAATGTTTTGCTTCTCGTATGACTCTTTATTATGATCAACAACTTGATGATTACTTTAATGCCCCTGGTGTACACACACGTGTCCCTCTCTTTGGTTCTACATCCTCTCTTCTTTATCTTAATCCTCGTCTTAAGCTTGTGACAGAGTACATGGCAACCTTAGTAGAATCATTAGAACAGATTGGTTACATAGATGGTGAAAATCTGTTTGGAGCTCCGTATGATTTTCGATACGGTCTAGCAGCACCAGGTCATCCATCTCGAGTAGGATCTAAATTCCTAAACGACCTAAAGAATTTGATAGAAGAAGCGAGCAATTCCAATGGAGGGAAACCGATAATACTTGTGTCACACAGCTTAGGAGGTTTATTTGTCCTCGAACTCCTTAATCGCAACCCTTCTTCTTGGCGCAAGAAATTTATTAAACATTTTATAGCTCTTTCTGCTCCATGGGGCGGAACTGTTGATATAATGTTCACTTTTGCATCAGGAAATACTTTGGGGGTGCCATTAGTAAACCCTTTGATTGTAAGAAATGAACAGAGAAGTTCTGAGAGTAACCTATGGCTTATGCCTAATCCAAAGATGTTCGATGCTAAAAAAACATTAGTTACTACTCCGAATAGAACCTATTCAGCTCATGATATGGTTGATTTTCTTAAAGATATCGGTTTTCCTGAAGGGGTTTATCCTTATGAAACTCGCATTTTACCTTTGATGGCGAAAATTGAAGCACCAGAAGTGAATATGACTTGTATTGTAGGGAAAGATGTGAAGACTCCGGAGGAATTATTTTATAGGAATGGCGATTTTGATGAACCGCCGGAGTTTTCTTATGGAGATGGCGATGGAACTGTGAATATGGTTAGCTTATTAGCACTTGAGAAACTATGGAAAGATGAGAAAAATCAGTATTTGAAAGTGATTAAGATTGGTGGGGTGTCTCATACTTCCATATTAAAAGATAAAGTTGCACTTGATGAAATAATTGGTGAGATTAGTAGAATTAATTCTCATGCTCAACTTGGTTTGAGCAATATTTCTTTGGCTACATGGGACGAGAAATGA 1278 0.374 MLSLICCTNSNNLNPVILIPGNGGNQLEAKLTKQYKPSTLICDPWYPPFKKKNGWFRLWFDSSVLLAPFTKCFASRMTLYYDQQLDDYFNAPGVHTRVPLFGSTSSLLYLNPRLKLVTEYMATLVESLEQIGYIDGENLFGAPYDFRYGLAAPGHPSRVGSKFLNDLKNLIEEASNSNGGKPIILVSHSLGGLFVLELLNRNPSSWRKKFIKHFIALSAPWGGTVDIMFTFASGNTLGVPLVNPLIVRNEQRSSESNLWLMPNPKMFDAKKTLVTTPNRTYSAHDMVDFLKDIGFPEGVYPYETRILPLMAKIEAPEVNMTCIVGKDVKTPEELFYRNGDFDEPPEFSYGDGDGTVNMVSLLALEKLWKDEKNQYLKVIKIGGVSHTSILKDKVALDEIIGEISRINSHAQLGLSNISLATWDEK 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04947 425 Pfam Lecithin:cholesterol acyltransferase 56 292 IPR003386 GO:0006629|GO:0008374
Trre5g04947 425 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 11 405 - -
Trre5g04947 425 Gene3D alpha/beta hydrolase 336 404 IPR029058 -
Trre5g04947 425 Gene3D alpha/beta hydrolase 62 239 IPR029058 -
Trre5g04947 425 SUPERFAMILY alpha/beta-Hydrolases 12 400 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04947 Trre-Chr5 51143982 51145742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04947 2 407 Acyl Lipid Metabolism Gene Families AT1G27480 60.391 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04947 - - gmx:100804027 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04947 5 51143982 51145742 Trre5g04947 5 51143982 51145742 ECH