Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04933 ATGGATACGTGGAAGAATATCAGAAACAGAGAATTCGGAAAATTGCAACCAAATTCCTTCGCTAATCGCATAAAATCAAATCGCATTTCTCAACTCGAGTTATCAAATCACAAAGAACTCGTTTCACCTCACAAAGGCGCAATTAACTCTCTTCAGATTGATTTAACAGAGGGAAGATACTTGTTATCTTCTGCATCGGATGCATCCGTCGCGGTTTACGATGTTCAACGGCCGAGTGATTACACCGGTGTGATATCCAAACATAGTTGTTTATTTGTTATTGATAAGCAACATCAATTAGCTCATAAATATGCAGTTTCTTCAGCTATATGGTATCCCATTGATACTGGATTATTCATTACCGGTTCATATGATCATTTTGTTAATGTTTGGGACACTAACACCACTCAGGTGGTGGTGAATTTCAAAATGCCTGGAAAGGTGTATAAGACTGCAATGTCTACATTGTCGACATCTCACACACTTATTGCTGTTGGAACTGAAGATGTTCAAGTTCGTCTTTGTGATATTACTTCTGGGGCATTTGCTCATACTTTGTCTGGTCATCGTGATGGTGTAATGACTGTTGAATGGTCTGCTTCAAGTGAATGGGTCTTGATTACTGGTGGGTGCGATGGTGCAATACGTTTTTGGGACATAAGGCGTGCTGGTTGTTTCCAAGTTTTAAATCAATCTCGAACGCAACTTGGAAGACGTCCACCTCTACTCAAACGTTCCATATTAACTAAGGAATCAAGTACAAAAATGCGTGCTGCACAGAAGAAACTTGCGAATGGCAGTGGCAGTGGACAACTGCCAATTGGCAGGCTATCATCTAAGGGACCAATGAAGCAGAAATTACATCCAGGAATGCTTTCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGATTGAAAGTAACAGAGGATGGCATGTATCTCTTAAGTGCAGGGTCTGATTCAAGATTGAGGTTATGGGATATTGAGTCAGGCTGCGATACACTTGTGAACTTCGAAACAGTCCGCTTGCAAACAAGCAGACCTATTCAATTAGCTACAACTCAAGACTCGGCCCTCGTTTTCGTTCCATGCATGAGAGTTGTGAAGGCATTTGATATGTGGTCTGGGAACACACACACGATATTACGTGGACACTATGAATCTGTAAACTCCTGCTGGTTTAATCAACAAGACCAGGAGTTGTACACTGGTGGAAATGATAGGCAAATTCTTGTATGGTCGCCTGCCAGGTCAATTGCCGATGAAATGGGTGAAGGAGATCCCGACGATCAGGATAGCTGGAGTAACTGA 1320 0.4212 MDTWKNIRNREFGKLQPNSFANRIKSNRISQLELSNHKELVSPHKGAINSLQIDLTEGRYLLSSASDASVAVYDVQRPSDYTGVISKHSCLFVIDKQHQLAHKYAVSSAIWYPIDTGLFITGSYDHFVNVWDTNTTQVVVNFKMPGKVYKTAMSTLSTSHTLIAVGTEDVQVRLCDITSGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCFQVLNQSRTQLGRRPPLLKRSILTKESSTKMRAAQKKLANGSGSGQLPIGRLSSKGPMKQKLHPGMLSTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDIESGCDTLVNFETVRLQTSRPIQLATTQDSALVFVPCMRVVKAFDMWSGNTHTILRGHYESVNSCWFNQQDQELYTGGNDRQILVWSPARSIADEMGEGDPDDQDSWSN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04933 439 SMART WD40_4 87 132 IPR001680 GO:0005515
Trre5g04933 439 SMART WD40_4 378 417 IPR001680 GO:0005515
Trre5g04933 439 SMART WD40_4 288 330 IPR001680 GO:0005515
Trre5g04933 439 SMART WD40_4 179 219 IPR001680 GO:0005515
Trre5g04933 439 SMART WD40_4 33 74 IPR001680 GO:0005515
Trre5g04933 439 ProSitePatterns Trp-Asp (WD) repeats signature. 206 220 IPR019775 -
Trre5g04933 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 334 - -
Trre5g04933 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 228 IPR001680 GO:0005515
Trre5g04933 439 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 438 IPR042238 GO:0006283
Trre5g04933 439 SUPERFAMILY WD40 repeat-like 42 419 IPR036322 GO:0005515
Trre5g04933 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 417 IPR001680 GO:0005515
Trre5g04933 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 221 - -
Trre5g04933 439 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Trre5g04933 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 417 - -
Trre5g04933 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 141 IPR001680 GO:0005515
Trre5g04933 439 Gene3D - 4 420 IPR015943 GO:0005515
Trre5g04933 439 FunFam Transducin/WD40 repeat-like superfamily protein 4 266 - -
Trre5g04933 439 FunFam Excision repair cross-complementation group 8 278 420 - -
Trre5g04933 439 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Trre5g04933 439 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Trre5g04933 439 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Trre5g04933 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 339 IPR001680 GO:0005515
Trre5g04933 439 Pfam WD domain, G-beta repeat 184 219 IPR001680 GO:0005515
Trre5g04933 439 Pfam WD domain, G-beta repeat 299 330 IPR001680 GO:0005515
Trre5g04933 439 Pfam WD domain, G-beta repeat 383 417 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04933 Trre-Chr5 51035645 51039956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04933 159 334 Miscellaneous Gene Families AT5G08390 24.432 1.08e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04933 K10570 - gmx:100815581 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04933 5 51035645 51039956 Trre5g04933 5 51035645 51039956 ECH