Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04907 ATGAAGCTTGCATTTGCATTATTCCTTCTTGTCCTCAGCTCCTCTTTATTGGAAGTCTCATTAGCTGGTTCTGTATTTTGTGACACTAGGTGTGCAGAAAGGTGCTCAGCAGCTTCGATTCAGGACAGATGTTTGAAGTATTGTGGGATCTGTTGTGAGAAATGTAACTGTGTGCCATCTGGGACTTATGGTAACAAAGATGAGTGTCCTTGTTATAGAGACATGAAGAACTCAAAGGGCAAAGGAAAATGCCCTTAA 258 0.4147 MKLAFALFLLVLSSSLLEVSLAGSVFCDTRCAERCSAASIQDRCLKYCGICCEKCNCVPSGTYGNKDECPCYRDMKNSKGKGKCP 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04907 85 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 5 85 - -
Trre5g04907 85 Pfam Gibberellin regulated protein 26 85 IPR003854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04907 Trre-Chr5 50804966 50805687 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04907 - - mtr:25489929 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04907 5 50804966 50805687 Trre1g05796 1 62791082 62791427 ECH
Trre5g04907 5 50804966 50805687 Trre5g04907 5 50804966 50805687 ECH
Trre1g00382 1 2726026 2727185 Trre5g04907 5 50804966 50805687 PCT