Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04884 ATGGAAAGTACCAAAACAAGTAGCGATGTTTCCGACAATTCCAACAGTAGTAGCTCTGAAACTGAAATCGAAAACCTTATCTCTGTTTCTCCTTACGCTGAAGGAGAAAAAGTCTTAGCTTACCACACAACATGTCTTTATGAAGCTAAGGTTAAGCGAATTGAGTACAAACATAAACGATGGAGATTCTTTCTTCATTATCTTGGTTGGAAGAAAAGTTGGGATGAATGGGTTGTTATTGATCGATTGATGAAACATACGGAGGAAAATATGCGGATAAAACTTGCTCTTGATGAGAAATATGGCAATGAGAAGAATGCCAGGAAACCGCGTGCGTCAACCAAGGGTTCTAATGTAGCTAGAGGCAGGAAACGAAAGAGTGATTCTCTGGTTAAGGAAAAACTTGTGGTTCTTCATGATAAACTTGTCAACATTCAAATTCCACCAACACTGAGGAAGCAACTGGTTGACGATTTTGAGTTTATAACTCATCTTGGCAAGCTTGTTAAACTTCCTCGTACTCCTAATGTGAACGACATATTCAAGACCTATTTTGATTACAGATTGAAGAAAAGTGGATCGATAGCTGATTCGGTTGAAGAAATTATGAAAGGACTGTGTTGTTACTTTGACAAAGCACTGCCAACGATGCTCTTGTACAATAATGAGCGTCAGCAGTACCAAGAAGCTTGTCCAAATGATATTGTTCCTTCTGATATATACGGTGCAGAGCATTTGTTACGCCTCTTTGTTAAGCTGCCAGAGATATTGTTCCATGCTAACATCGAAGACGATACATTGGTAGAACTCCACACTCAAATACTCGACTTTCTCAGGTTCTTGCGAAGAAATCAGCGTGCATTTTTCCTTTCTTCTTATCATGTCCAGGAGGATGTTGAGAACAGCAGCGACAAACAATTTTGTATTTCAAATAATATCACATAG 945 0.3884 MESTKTSSDVSDNSNSSSSETEIENLISVSPYAEGEKVLAYHTTCLYEAKVKRIEYKHKRWRFFLHYLGWKKSWDEWVVIDRLMKHTEENMRIKLALDEKYGNEKNARKPRASTKGSNVARGRKRKSDSLVKEKLVVLHDKLVNIQIPPTLRKQLVDDFEFITHLGKLVKLPRTPNVNDIFKTYFDYRLKKSGSIADSVEEIMKGLCCYFDKALPTMLLYNNERQQYQEACPNDIVPSDIYGAEHLLRLFVKLPEILFHANIEDDTLVELHTQILDFLRFLRRNQRAFFLSSYHVQEDVENSSDKQFCISNNIT 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04884 314 Gene3D - 15 114 - -
Trre5g04884 314 Pfam MRG 134 293 IPR026541 -
Trre5g04884 314 Gene3D MRG domain 136 306 IPR038217 -
Trre5g04884 314 ProSiteProfiles MRG domain profile. 139 306 - -
Trre5g04884 314 SUPERFAMILY Chromo domain-like 29 163 IPR016197 -
Trre5g04884 314 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g04884 314 MobiDBLite consensus disorder prediction 104 126 - -
Trre5g04884 314 CDD CBD_MSL3_like 36 92 - -
Trre5g04884 314 FunFam Chromatin modification-related protein EAF3 139 302 - -
Trre5g04884 314 Pfam RNA binding activity-knot of a chromodomain 34 83 IPR025995 -
Trre5g04884 314 PIRSF EAF3_MRG15 27 306 IPR008676 GO:0005634|GO:0006325|GO:0006355
Trre5g04884 314 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 31 297 IPR008676 GO:0005634|GO:0006325|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04884 Trre-Chr5 50626237 50630225 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04884 K11339 - gmx:100777259 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04884 5 50626237 50630225 Trre5g04884 5 50626237 50630225 ECH