Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04830 ATGGGTGGCGCTCACAGTCGCGACGGATATCTCGACAGTTCCGATGAAGAAAACGAAGAAAATGAAAACGAAGAAACAAATTACGAAGATGCAAGCGAAGGAAATTCAGCGGAAAGAATCAAAACTCCGTCATCAATTGATGATGTTGATGCTAAACTCAAAGCTCTCAAGCTCAAATACTCCTCCAAAAATCATAACCCTCAAAACCCTAACGCCGTTAAGCTTTATCTTCATATCGGTGGTAACACTCCCAATGCAAAATGGGTGATTTCTGAGAAATTGACATCTTATTCTTTTGTCAAGACTCGTCGTGTTGACGGGGATAGCGGTGATGATGAAGATGATGAGGATGAGGATGAAGGTTTTTGGGTTTTGAAAATTGGTTCTAAAATTAGGTCAAAAGTTGGTGCTGATATGCAATTGAAAACCCTAGCGGATCAGCGTCGTGTTGATTTTGTCGCAAAAGGTGTTTGGGCGTTGAAGTTCTTTACGGAACAGCATTACAATGCGTTTTTGGTTCAGTTTCAGAATTGTACTTTTGAGAATATGCATGGATATGAAGCTAATGATGAGAACAAGCTTAAGGTTTATGGTAAGGATTTTCTTGGGTGGGCGAAACCGGAAGTGGCTGATGATTCAATGTGGGAGGATGCGGATGATAGCTTTTCGAAGAGCCCTGCTTCTGCCACGCCGGTTCGAGCAAGTCAGGATTTGAAGGAGGAATTTGAGGAAGCTGCGAATGGTGGAATTCAGAGCTTGGCGCTTGGTGCTCTAGATAACAGTTTCTTGGTTGGTGAAAATGGGATTCAGGTAGTGAAGAATTTTGCACATGGGATTCATGGAAAAGGTGCTTTTGTCAATTTTGGTGGTGGTTCGTCGTTGTCGTCTTCGAGTTTGGTGCATTCCACTCCCAAGAAAACACTTCTTATGAAGGCTGAAACCAGCATGCTTTTGATGAGTCCATTGGGTGAAAATAAGCTTCACTCAACAGGTCTTCACCAGTTTGATATTGAGACTGGGAAGGTTGTGACAGAATGGAGATTTGGTAAGGATGGCACTGAGATTACAATGAAAGATATCACCAATGATAGTAAAGGTTCTCAATTGGATCCATCGGGTTCGACTTTTCTTGGGTTGGATGATAACAGGCTCTGTAGGTGGGATATGCGTGACCGTCATGGAATAGTTCAGGATCTTGCTGATTCTAGGAGTGATATGAGTACACCTGTGTTGAATTGGGCACAGGGTCATCAGTTTTCGAGGGGGACAAACTTTCAATGCTTTGCTACAACTGGTGATGGTTCTGTTGTTGTCGGTTCTTTGGATGGAAAGATTCGGCTGTATTCGATCAACTCTATGAGGCAGGCGAAAACCGCTTTTCCTGGACTTGGTTCGCCGGTTACTCATGTCGATGTAACTTTTGATGGAAAGTGGATTGTGGGAACCACAGATACTTACTTGATTGTTATTTGTACTGTCTTTACTGATAAAGATGGAAAAACTAAAAATGGTTTTGCTGGAAGAATGGGAAATAGGATCGCTGCACCAAGATTGCTCAAGCTCAACCCTCTCGATTCACATCTAGCTGGAGTCAATAACAAATTCCATAATGCTCAGTTTTCGTGGGTGACAGAAAATGGGAGGCAGGAGCGACATATTGTAGCTACAGTGGGGAAATTCAGTGTGATATGGAATTTTCAACAAGTCAAGGATGGTTCTCATGAGTGCTACCACAGCCAACAGGGTCTAAAGAGCTGCTACTGCTACAAGATAGTCCTGAGGGACGACTCCATTGTTGAGAGCCGATTCATGCATGACAAGTTTGCAGTCACTGATTCTCCTGAGGCTCCATTGGTTATAGCTACCCCAATGAAAGTTAGCTCATTCAGCATATCCAACAGGCGATGA 1908 0.4313 MGGAHSRDGYLDSSDEENEENENEETNYEDASEGNSAERIKTPSSIDDVDAKLKALKLKYSSKNHNPQNPNAVKLYLHIGGNTPNAKWVISEKLTSYSFVKTRRVDGDSGDDEDDEDEDEGFWVLKIGSKIRSKVGADMQLKTLADQRRVDFVAKGVWALKFFTEQHYNAFLVQFQNCTFENMHGYEANDENKLKVYGKDFLGWAKPEVADDSMWEDADDSFSKSPASATPVRASQDLKEEFEEAANGGIQSLALGALDNSFLVGENGIQVVKNFAHGIHGKGAFVNFGGGSSLSSSSLVHSTPKKTLLMKAETSMLLMSPLGENKLHSTGLHQFDIETGKVVTEWRFGKDGTEITMKDITNDSKGSQLDPSGSTFLGLDDNRLCRWDMRDRHGIVQDLADSRSDMSTPVLNWAQGHQFSRGTNFQCFATTGDGSVVVGSLDGKIRLYSINSMRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDTYLIVICTVFTDKDGKTKNGFAGRMGNRIAAPRLLKLNPLDSHLAGVNNKFHNAQFSWVTENGRQERHIVATVGKFSVIWNFQQVKDGSHECYHSQQGLKSCYCYKIVLRDDSIVESRFMHDKFAVTDSPEAPLVIATPMKVSSFSISNRR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04830 635 Gene3D - 310 577 IPR015943 GO:0005515
Trre5g04830 635 FunFam Vacuolar import/degradation Vid27-related protein 314 607 - -
Trre5g04830 635 Pfam VID27 C-terminal WD40-like domain 259 578 IPR013863 -
Trre5g04830 635 SUPERFAMILY Putative isomerase YbhE 328 533 - -
Trre5g04830 635 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 2 633 IPR040458 -
Trre5g04830 635 Coils Coil 11 34 - -
Trre5g04830 635 MobiDBLite consensus disorder prediction 1 46 - -
Trre5g04830 635 MobiDBLite consensus disorder prediction 13 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04830 Trre-Chr5 50081715 50084536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04830 48 635 Acyl Lipid Metabolism Gene Families AT3G19240 65.714 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04830 - - zju:107419970 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04830 5 50081715 50084536 Trre5g04830 5 50081715 50084536 ECH