Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04746 ATGGCAACGGAAGGGATAGATGGAAGCGGCACCACCAGCGAAGTTGAAAACGATTTGGAATTGAAGCTTTTACGAGACAGATTCAGACTCTCCGCAATCTCAATCGCTGAATCTGAAGCGAACAAAAGCGGCATGGAAGTATCGAAAGTCGTAGTTGCTTGCGTTGCTGATTTAGCCTTCAAATACACCGAACGGTTAGCTAAGGATCTTCAACTATTCTCACAGCATGCAAATCGTAAATCTGTAAATATGGAAGATGTCGTACTCTGCGCGCATCGAAATGAAAATTTAACTGGCTTGTTGAGGAATTTCTCGAATGATTTAAAAGCCAATGATCGTCAATATGAAAGGAAGCGAAAGAAAGAGGCTACCAAGAATGACAAAACAACTGTTTAG 396 0.4167 MATEGIDGSGTTSEVENDLELKLLRDRFRLSAISIAESEANKSGMEVSKVVVACVADLAFKYTERLAKDLQLFSQHANRKSVNMEDVVLCAHRNENLTGLLRNFSNDLKANDRQYERKRKKEATKNDKTTV 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04746 131 Pfam CENP-S protein 27 97 IPR029003 GO:0071821
Trre5g04746 131 Gene3D Histone, subunit A 6 122 IPR009072 GO:0046982
Trre5g04746 131 SUPERFAMILY Histone-fold 34 95 IPR009072 GO:0046982
Trre5g04746 131 PANTHER CORTISTATIN 12 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04746 Trre-Chr5 49306091 49306959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04746 K11511 - gmx:100798682 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04746 5 49306091 49306959 Trre5g04746 5 49306091 49306959 ECH