Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04675 ATGGAGGAACCACCGTGTTCGTCATCGGAGAGATCAAGCACCAAAGGAAAACCCTCAATCGATCCGATCATCGGTATCAGCTTACTGAACGACGATCTTCTACACAACATTCTCACCAGACTTCCTGCACTATCGTTCGCTTCTGCATCTTGCGTTAACAAATCATGGAAATCCGTTTGCAATCGCATCATTTCTCGTCCTAAGCTATCTTCTGCACTTTCTCTCAACCCTTCGCTCCTCGACGCTGTGAAAGAGGTTGTTAACAAGGTTCTATCTGAGCCAATTCGACCTCATTTTGCTATTGTCAATATTGGAAGTGGATTCGATTCGAACAAGATTCTGCGCCTTATTAGACGGAGATTGGGGTTCAATATTCCGGTTGTTGTCACGATGAATAATGGTGTTATTGGAAGGGATGCTCTTACTAATGAATTTAAAGAGGTAAAATGGGGTGCCCTTTTTAGTGGCATTGGTGACGAAGAATATGCAACAAATATAAATGAAGGGATGGTTTTGACAGTTGGATACTTGCCAGGATTAAAAGTCGAAGCTATACCGTTACTACGACCGCCAAAGACACCTCAAGAACCATGCGTTGATAATTTTGTAATGGCTATCAAGGAATACTCAGCCTCTGTCTCTGGTCGCCAATTCCCTGTTGGGGTTATATTATTTGGAGATGCAAGCAGTGACATGAAACTGGTTGTGGAGAAGTTGGATTATGCCATGCCTACAGACACATTCATTGTGGGTGATGAGAGAGGCTGTTCTTTATTCGGATATGGAAATGATTCTAGAAATGTCTGTGGTAGTAGAGGGTACATAGAAGCAGTTGCCCTTGTATTTGCTCAGGACCGAAACAGGTCTTCTGGAAATATTAGATTTCATGTTGCATTCTCAAATGGTGTTTCACCTGTGGGTGGCAGATACAAGGCAGCTTCAGTTAGAACAAACAACACCGATTGTTCAACATGGCTAACTGCCAAAAGGGAAGGGCATCAAGAACTTCTTGATGGTCAGAGTATTCTGCATGATATTACCACTTTGCTGGAAAATCATATTGAGCCTCCTGAGTTGTACATCGGAGTAACTAAACACAGGAAAGTTTCCATTGGAGCAGAGAGGCCAATGCCAAAAACTTGTATTGCATATCATGGAGTTGTGGGAGGTGATGAAGAGTATCTATATGTTGATGGAATGGGCATCAAAACAGGAGATATCTTTCAGTTCTACTATTCAGATCCTAATGTTGCATTAGCTTCATTAACTGGTGTTCGTGATGCCCTTAACAAAGTTAAGCCGGAGAGGAATTCTAGGAGTTTTGAGGGTGATGGAGACAATGCTACCAATGTTTTCGGTGGTATTATTTTTGCTTGCTATGGCCGTGGCGAATCATTTTTTGGACGTCCTAATGCTGATAGCTCCCCCTTCTTAGAGACTTTTCCAGGAGTGCCATTGGGTGGAGTATTTTGTGGTGGAGAAATGGTGCGTCCTTCTACCAATTTGATTGGTCTATGTCCAGATGCAAAACCCATCAGTTGCTTTTTGCATGTTTATAGCACTGTCTATTTAGTGATGGCATATGATCCTCCCTCTGTGGAATATTAG 1608 0.4248 MEEPPCSSSERSSTKGKPSIDPIIGISLLNDDLLHNILTRLPALSFASASCVNKSWKSVCNRIISRPKLSSALSLNPSLLDAVKEVVNKVLSEPIRPHFAIVNIGSGFDSNKILRLIRRRLGFNIPVVVTMNNGVIGRDALTNEFKEVKWGALFSGIGDEEYATNINEGMVLTVGYLPGLKVEAIPLLRPPKTPQEPCVDNFVMAIKEYSASVSGRQFPVGVILFGDASSDMKLVVEKLDYAMPTDTFIVGDERGCSLFGYGNDSRNVCGSRGYIEAVALVFAQDRNRSSGNIRFHVAFSNGVSPVGGRYKAASVRTNNTDCSTWLTAKREGHQELLDGQSILHDITTLLENHIEPPELYIGVTKHRKVSIGAERPMPKTCIAYHGVVGGDEEYLYVDGMGIKTGDIFQFYYSDPNVALASLTGVRDALNKVKPERNSRSFEGDGDNATNVFGGIIFACYGRGESFFGRPNADSSPFLETFPGVPLGGVFCGGEMVRPSTNLIGLCPDAKPISCFLHVYSTVYLVMAYDPPSVEY 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04675 535 SMART FIST_C_2 342 498 IPR019494 -
Trre5g04675 535 Pfam F-box domain 26 65 IPR001810 GO:0005515
Trre5g04675 535 SUPERFAMILY F-box domain 26 61 IPR036047 GO:0005515
Trre5g04675 535 Pfam FIST C domain 401 496 IPR019494 -
Trre5g04675 535 Gene3D - 24 69 - -
Trre5g04675 535 PANTHER F-BOX ONLY PROTEIN 22 26 530 - -
Trre5g04675 535 Pfam FIST N domain 108 317 IPR013702 -
Trre5g04675 535 SMART fbox_2 29 69 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04675 Trre-Chr5 48723739 48729997 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04675 - - gmx:100815778 785.793