Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04656 ATGAGAAGGCCATTGAAACTTCCATGTCACAACAACAACAACAACAATCAAGACCCTTTCCAACAATTACCCGATGATGTCGTCCTCCTTATTCTCACCAAGCTCAGCTCAACTTCTTCTTCTCCTCCCCATTTCCTCAACGTTCTCTTAACATGCAAAAGATTGAACCGCTTATCTCTTCATCCAATAGTATTATCCAAAGCTGGACCCAAAGTTCTCGCCGTCAAGCCCCAAAATTGGGGTGAAACTTCTCACCGTTTTCTCAAACGCTGTGTTAACGCCGGCAACGTTGATGCCTGCTACACTCTTGGAATGATCCTATTTTACTGTCTTCAAAATCGAAGAAATGGACTATCGCTGATAGCGAAGGCGGCAATAAAGATGCACGCGCCGGCGTTATACTCACTCGCTGTGATTCAGTTCAACGGAAGCGGTGGCACTAAGCAAGACAAAGATCTACGCGCTGGAGTGGCACTTTCATTACGCGCGTCACTTCTCGGCCATATCGACGCGCTTCGGGAGTTGGGTCATTGTCTTCAAGACGGTTACGGAATCAAGCAGAACGTCACGGAGGGACGACGATTGTTGGTACAGGCTAACATGCGTGAGCTAGTATTTGTCTTACGCGCTGTTATGTTAGATTCACCTTCACGCGCCGCCGGTTCCTGTCAGGGGAGGTTGCTTAGCCTGAGAAACATGACTGTGCCGCCGTTGATAAGTGCTAATGTGTATAACGTGAACTTGACTGTGCCGGATGTGCATCCGGCAAACGGGTTTTTGAGAGAGTGGTTTGAATCGGGTCGGGGCACGTTGGAGGATGGGTTGAGGTTGTGTGCACATATTGGATGTGGGCGGGCAGAGACGCGGCCGCATGAGTTTCGGCGGTGTTCGGTGTGTGGTAAGGTGAATTATTGTTCGAGGGGATGTCAGTCGCTGGATTGGAAATTGCGGCATAAGACCGAGTGCTCGCCGGAATTGTGGTTTAACGAGAATAATGCCGGTGGTGATGTGAACATGGAAAATGACATGGTCGTCCAAAATGCAGCTGTTTAA 1053 0.491 MRRPLKLPCHNNNNNNQDPFQQLPDDVVLLILTKLSSTSSSPPHFLNVLLTCKRLNRLSLHPIVLSKAGPKVLAVKPQNWGETSHRFLKRCVNAGNVDACYTLGMILFYCLQNRRNGLSLIAKAAIKMHAPALYSLAVIQFNGSGGTKQDKDLRAGVALSLRASLLGHIDALRELGHCLQDGYGIKQNVTEGRRLLVQANMRELVFVLRAVMLDSPSRAAGSCQGRLLSLRNMTVPPLISANVYNVNLTVPDVHPANGFLREWFESGRGTLEDGLRLCAHIGCGRAETRPHEFRRCSVCGKVNYCSRGCQSLDWKLRHKTECSPELWFNENNAGGDVNMENDMVVQNAAV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04656 350 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g04656 350 ProSiteProfiles Zinc finger MYND-type profile. 280 322 IPR002893 -
Trre5g04656 350 SUPERFAMILY HIT/MYND zinc finger-like 276 324 - -
Trre5g04656 350 SUPERFAMILY F-box domain 11 68 IPR036047 GO:0005515
Trre5g04656 350 Gene3D - 269 326 - -
Trre5g04656 350 FunFam Predicted protein 270 325 - -
Trre5g04656 350 Pfam Sel1 repeat 98 113 IPR006597 -
Trre5g04656 350 Pfam Sel1 repeat 170 199 IPR006597 -
Trre5g04656 350 Pfam Sel1 repeat 130 168 IPR006597 -
Trre5g04656 350 Pfam MYND finger 283 322 IPR002893 -
Trre5g04656 350 SUPERFAMILY HCP-like 83 199 - -
Trre5g04656 350 PANTHER MYND DOMAIN-CONTAINING 10 342 IPR044508 -
Trre5g04656 350 CDD F-box_SF 22 59 - -
Trre5g04656 350 Gene3D Tetratricopeptide repeat domain 76 205 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04656 Trre-Chr5 48578534 48579768 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04656 - - cam:101501389 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04656 5 48578534 48579768 Trre5g04656 5 48578534 48579768 ECH