Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04631 ATGCTTCACCACCCATTACTCTGCGCTTCAACAACCGCCACTCAATCTACACTCTTCGCTCCCGTTTCCTCCGCCGCCGCAAACATTCCTCGACGCAATTCACTTCCCGGAAATTTCTCTCCCCATGATGTCTGGTTGAAGTTTAGTATGCAAGTATCTCGAAGCAAATCGAGCAATAGTGGACATGGAATTTATAGTGAGATAAGAGAAGGTTCTAAGCTTAATGCGAATGCTTATGGTCGGGCTCAAGAAGAGGTTCTTAAGGAAGAAGCTTTCAAAGATATGGAAAACAGACCATCATGGAAAATTTCTCCAGGCCAAACATTTCCATTGGGAGTATCACAAGTTGACAATGGGATCAATTTTGCTATTTTTTCACAGCATGCAACTACTGTCACACTATGTTTGGTCCTTCCTGAAAGGGGAAGCATTGAGACACTGGATGGTGGTATGATAGAACTGGCTTTGGATCCTCATGTAAACAAAACAGGGGACATTTGGCACATAAGTATTGAGGATCTTCCTAGGAGCAATGTTCTGTACGGATATCGGATAGATGGACCTCAAGATTGGGGTAAGGGGCATCGATTTGATGGAAGCATTGTGCTTGTTGATCCTTATGCAAAACTAATTGAAGGTCGAAGATATTTTGGGGATATTAGCATGAAGTTGTCTAAGTTTCTAGGCACTTATGATTTTGACAGCTTGCCTTTTGACTGGGGTGAAAATTACAAGCTTCCAAATATTGCCGAGAACGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATGGATGAATCTAGTGGGTTGGATAACAACATTCGTGGAAGCTATCTTGGTGTGATTGAGAAGATCCCACACCTTCTAGAGCTTGGTATCAATGCAGTGGAGTTGCTGCCTATCTTTGAGTTTGATGAGATGGAATTGCAGAGGCGTCCAAATCCCAGAGATCACATGATTAATACGTGGGGTTATTCAACAATAAATTTCTTTGCCCCTATGACTCGCTATGCCAGTGCTGGTGGAGGACCAGCTAATGCTTCTCAAGAGTTCAAGGAAATGGTTAAAGCCTTACATTCTGCTGGCATAGAGGTTATTTTGGATGTTGTCTACAATCATACCAATGAGGCTGATGATCCAAATCCTTACATCACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTTGATGACAAAGGACAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACATTGGGTCACTGAGTATCATGTGGACGGGTTTCGATTTGATCTCGCAAGTGTACTGTGTCGAGGAACTGATGGTTCCCCCCTCAATGCTCCTCCACTCATTAGGGCAATTGCTAAAGATGCAGTCTTGTCAAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTCTATCTTGTTGGAAGTTTTCCAAATTGGGACCGGTGGGCTGAATGGAATGGGATATATCGTGATGACATGCGGAAATTTATCAAGGGCGACTCTGGTATGAAGGGGAGCTTTGCAACTCGTGTTTCTGGATCTTCGGATCTTTACAGAGTGAACAAGCGTAGACCATATCATGGTATTAATTTTGTTATTGCACATGATGGATTCAGCTTGCGCGATCTTGTTTCATACAACTTCAAGCACAATGAAGCTAATGGGGAAGGTGGAAATGATGGATGCAATGATAACTTCAGTTGGAATTGTGGTTTTGAAGGTGAAACTGATGATGCTAGTATAAGAGCTTTGCGGTCGAGACAAATGAAGAACTTTCATTTGGCATTAATGATATCTCAGGGCACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCTATGGAAATAACAACAGTTATGGGCATGATTCTGCTCTTAATTTTTTCCTGTGGGATCAGTTGGATGCAAGGAAGGGTGATCACTTTAGGTTTTTCTCCAATGTGATAAAGTATCGGCATGAACATAAAATATTCAATCATGAAAATTTTCTCAGTGAGAATGAAATAACATGGCATGAAGACAATTGGGGAAATTATGAAAGCAAATTTCTTGCATTTACGCTTCATGACAAAAGTGGGGGAGATATTTATATAGCTTTTAATGCTCATGACTACTTTTTGAAAGCTCTTCTGCCCACACCCCCAACAAATAGAAGGTGGTTTCGCGTGGTGGATACTAATCTTAAATCTCCCGATGACTTTGTCCTCGATGGTGTCCCTGGCGTAGAAAAAACATACAGTATAGCTCCATACTCCTCCATTCTTCTTGAGGCAAAGGTCCTTGGCCCAGTATGGCCTGAAGTTACAGCTTAG 2379 0.4182 MLHHPLLCASTTATQSTLFAPVSSAAANIPRRNSLPGNFSPHDVWLKFSMQVSRSKSSNSGHGIYSEIREGSKLNANAYGRAQEEVLKEEAFKDMENRPSWKISPGQTFPLGVSQVDNGINFAIFSQHATTVTLCLVLPERGSIETLDGGMIELALDPHVNKTGDIWHISIEDLPRSNVLYGYRIDGPQDWGKGHRFDGSIVLVDPYAKLIEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNIAENDLVIYEMNVRAFTMDESSGLDNNIRGSYLGVIEKIPHLLELGINAVELLPIFEFDEMELQRRPNPRDHMINTWGYSTINFFAPMTRYASAGGGPANASQEFKEMVKALHSAGIEVILDVVYNHTNEADDPNPYITSFRGIDNKVYYMLDDKGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGIYRDDMRKFIKGDSGMKGSFATRVSGSSDLYRVNKRRPYHGINFVIAHDGFSLRDLVSYNFKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDSALNFFLWDQLDARKGDHFRFFSNVIKYRHEHKIFNHENFLSENEITWHEDNWGNYESKFLAFTLHDKSGGDIYIAFNAHDYFLKALLPTPPTNRRWFRVVDTNLKSPDDFVLDGVPGVEKTYSIAPYSSILLEAKVLGPVWPEVTA 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04631 792 SUPERFAMILY (Trans)glycosidases 237 680 IPR017853 -
Trre5g04631 792 SUPERFAMILY Glycosyl hydrolase domain 688 781 - -
Trre5g04631 792 Gene3D Glycosidases 234 688 - -
Trre5g04631 792 FunFam Glycogen debranching enzyme 234 688 - -
Trre5g04631 792 SUPERFAMILY E set domains 105 242 IPR014756 -
Trre5g04631 792 Gene3D - 689 785 IPR013780 -
Trre5g04631 792 CDD E_set_GDE_Isoamylase_N 109 258 IPR044505 -
Trre5g04631 792 CDD AmyAc_Glg_debranch 238 677 - -
Trre5g04631 792 Pfam Alpha amylase, catalytic domain 279 391 IPR006047 GO:0005975
Trre5g04631 792 PANTHER GLYCOGEN DEBRANCHING ENZYME 86 781 - -
Trre5g04631 792 Gene3D Immunoglobulins 91 228 IPR013783 -
Trre5g04631 792 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 110 208 IPR004193 GO:0004553|GO:0005975
Trre5g04631 792 SMART aamy 258 665 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04631 Trre-Chr5 48311805 48326111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04631 11 781 Glycoside Hydrolase AT4G09020 73.351 0.0 1179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04631 K01214 - gmx:100807545 1350.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04631 5 48311805 48326111 Trre5g04631 5 48311805 48326111 ECH