Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04620 ATGGCTCAACAAAAAAGACTAAAAACTCTCACAAACAATCTCAAAGACAAAGTTTCAGTAATCTACGCATCACTCTCCATCAAACGCCACGTGTCATCCATCCAACTCAACATCCTCCGTGCAACATCTCACAGCCTCTCATCTCCACCGTCCGATTCACAAATCGCCGCCGTACTCACAATCGCCAACACCTCCCACACATTCCCTCGCGCCTGCATCAACTCCCTCATGGATCGTCTTCACAGAACCAAAAACTCCACCGTTGCATTGAAATGTCTCTTCACTCTTCACAATATCACCATTCAAGGTTCTTTCATTCTTAAAGATCAATTATCTTCTTACCCTTCTTACGGTGGTTATAATTTTCTTAATCTTTCTACTTTTCGTGATGACTCGGATTTTGAATCGGTTCAACTCAGTTCTTGGGTTCGTTGGTATGCAACTGTTCTTGAACAAATTTTAACCGTTTCAAGAATATTGGGTTATTATCTAAACTCTAATAATAATAATAATAATAATTCAACAAATTCAACAAAAAACAAAGATTTTGTTTTGGGCTTACGTTTGTCGAGTTTGTCGAGTGCTGATTTGTTATATAAGATAGAATGTTTGGTTGTTTTTGTTGAACGAGTTAGTGATTTTCCTGAATCATTGGATTTACAGAGGAATGAATTGGTTTATGAAATTGTAAGAATGGTTGGTGAAGATTATAGAAAAGTACAAGGTGAGATTTTGTTGAGAGTGGAAGAACTTGGGAGAAGAATTGATGATGATTTTGATATGGGTGAGTTGAACGAGTTACTGAGTTATTTGAAGAGATTAGAAGAAAGTAAAGAAAAATTGGTGCTTTTGTTTGTGAATAGAAGAAAAAATAATGGGTTTTGGGAATTGATTAAGGAGATAAAGATGAAAGGGTTGAAGAAGAAGGAGGAGATTGAAGGGAAGTGGATTACGGTGGTGGTGAATAGTAGTAACACGGTGGTGACTGAGTTGACTCGGTGTACAAACCCGTTTCTTGAACCGGGACAATATTTGCAGGTCCCACAAACTTTTGCAACGGTAAGATGA 1068 0.3773 MAQQKRLKTLTNNLKDKVSVIYASLSIKRHVSSIQLNILRATSHSLSSPPSDSQIAAVLTIANTSHTFPRACINSLMDRLHRTKNSTVALKCLFTLHNITIQGSFILKDQLSSYPSYGGYNFLNLSTFRDDSDFESVQLSSWVRWYATVLEQILTVSRILGYYLNSNNNNNNNSTNSTKNKDFVLGLRLSSLSSADLLYKIECLVVFVERVSDFPESLDLQRNELVYEIVRMVGEDYRKVQGEILLRVEELGRRIDDDFDMGELNELLSYLKRLEESKEKLVLLFVNRRKNNGFWELIKEIKMKGLKKKEEIEGKWITVVVNSSNTVVTELTRCTNPFLEPGQYLQVPQTFATVR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04620 355 Pfam ANTH domain 35 282 IPR011417 GO:0005543
Trre5g04620 355 SUPERFAMILY ENTH/VHS domain 32 161 IPR008942 -
Trre5g04620 355 CDD ANTH_N_AP180_plant 34 157 - -
Trre5g04620 355 FunFam Putative clathrin assembly protein At4g40080 6 163 - -
Trre5g04620 355 ProSiteProfiles ENTH domain profile. 26 164 IPR013809 -
Trre5g04620 355 Gene3D - 4 163 IPR008942 -
Trre5g04620 355 PANTHER CLATHRIN ASSEMBLY PROTEIN 10 321 IPR045192 GO:0048268|GO:0072583
Trre5g04620 355 SMART enth_2 32 164 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04620 Trre-Chr5 48226200 48227267 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04620 - - gmx:100788852 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04620 5 48226200 48227267 Trre5g04620 5 48226200 48227267 ECH