Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04612 ATGGCAAACCAAATCTTCCGCCGGAGCAGCATCAGCAGCTTTGTTTTCGCCGCACGAAATCTTCGGACCCAATCAGATTCTCTCTCTTCACCATTTTCAGACAAACACAACCTCAAGACACTAATTGCGGGATTCAAACGTGGGAATCCATTGCCGCTTCTTCAAAATTGGGTCGACCAAGGTAACAAACTTTCACCATCGGAACTCAGGTGCATCTCCAGAACCCTAATTAAATCCAACCGCTACAACCACGCATTTCAGGTATTGAACTGGATGGAAAACCAACAAGAGTTCCGTATAAACCCAGCTGATCATGCTTTGAAATTGGAGTTAATCATTAAAAATTATGGGCTAATGGAAGCTGAAGAATATTTTATGAGTATACCCGACTCACCAGGAAAGAAAGCTGCCTATCTCCCACTTCTACGTGGCTATGTAAGAGATAGGGACACCGGTAAAGCTGAGACTTTCATGGCGAAGCTCTATGAGCTGGGGCTAGTGGTGAACCCCCACCCTTATAATGAGATGATGAAACTATATCTTGCCACAGGCGAGTATCGGAAGGTACCCTTAGTTATCCAACAAATGAAACGAAATAAGGTACCCTGCAATGTTTTATCCTACAACCTTTGGATGAATGCATGTGATGAGGGAGAACGATATGGGGTTGCAGCAGTGGAAGCAGTTTTTAGAGAAATGCAAAATGATGAGAATGTTGAGGTGGGATGGAGCAGTCTTGTTACTTTAGCCAATGTTTATATGAAAGCAGGACAATCTGAGAAAGCCATCCTAGTTCTGAAAAATGCTGAAGAGAAACTATCTAACTGTAACCGTCTTGGTTACTTCTTCATCATAACACTGTACGCCTCTTTGAAACAAAAAGAGGGAGTCTTGCGGTTGTGGGAAGCCAGTAAAGCTGTTGGTGGAAGAATCAGTTGTGCCAACTACATTTGCATACTAACAAGCTTGGTGAAGCTTGGGGACATAGCACAAGCGAAGAGAATCTTCAGAGAATGGGAATCTAATTGTCAAAAATATGATATCAGAGTCTCTAATATTCTTTTAGGTGCATATGTGCGGAATGGATTAATTGAAGAAGCTGAATCATTACATCTCCACACATTGCAGAAGGGTGGCTGTCCAAACTACAAGACATGGGAAATTCTCATTGAAGGATATGTCAATAGGCAAAAGATGGATGAGGCTATTATTGCCATGAAAAGAGCTTTGGCTATGTTGAAAGACTGTCATTGGAGGCCTTCACAAAGAATTGTATTAGCCATAGCTGAATATTTGGAGAATTGTGGGAATTTTGAATATGCAAACGAGTACATAACAAATATTCATAATTTAGGTCATGGAAGTTTATCATTGTATAAAATATTGCTTAGAATGCACCTTTCTGCTCGCAAACCACCTCTTCATGTCTTTCAAATGATCAATAAAGACAAAATTGAGATGGATAGTGAGACATTTTCCATTCTTAAAGCTTTCACCGGGTAG 1503 0.4079 MANQIFRRSSISSFVFAARNLRTQSDSLSSPFSDKHNLKTLIAGFKRGNPLPLLQNWVDQGNKLSPSELRCISRTLIKSNRYNHAFQVLNWMENQQEFRINPADHALKLELIIKNYGLMEAEEYFMSIPDSPGKKAAYLPLLRGYVRDRDTGKAETFMAKLYELGLVVNPHPYNEMMKLYLATGEYRKVPLVIQQMKRNKVPCNVLSYNLWMNACDEGERYGVAAVEAVFREMQNDENVEVGWSSLVTLANVYMKAGQSEKAILVLKNAEEKLSNCNRLGYFFIITLYASLKQKEGVLRLWEASKAVGGRISCANYICILTSLVKLGDIAQAKRIFREWESNCQKYDIRVSNILLGAYVRNGLIEEAESLHLHTLQKGGCPNYKTWEILIEGYVNRQKMDEAIIAMKRALAMLKDCHWRPSQRIVLAIAEYLENCGNFEYANEYITNIHNLGHGSLSLYKILLRMHLSARKPPLHVFQMINKDKIEMDSETFSILKAFTG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04612 500 PANTHER OS12G0527900 PROTEIN 26 478 - -
Trre5g04612 500 Pfam Pentatricopeptide repeat domain 163 215 IPR002885 -
Trre5g04612 500 SUPERFAMILY HCP-like 247 459 - -
Trre5g04612 500 Gene3D Tetratricopeptide repeat domain 244 448 IPR011990 GO:0005515
Trre5g04612 500 Gene3D Tetratricopeptide repeat domain 33 240 IPR011990 GO:0005515
Trre5g04612 500 Pfam PPR repeat 352 371 IPR002885 -
Trre5g04612 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04612 Trre-Chr5 48130653 48132536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04612 53 435 EF-hand Containing Proteins AT1G02150 34.115 4.29e-80 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04612 - - gmx:100803685 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04612 5 48130653 48132536 Trre5g04612 5 48130653 48132536 ECH