Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04588 ATGGACCCCAAGGAGAAACATGCTATGTACCGCGACATCGGTTTACAAGTCATAATGATCCTTGGAATGGTCATAATCTTCCTAAGCATGCACGGAATTCCACAAAAATTTCTCGCAAAACTCCGAATCCAAAACCGAACCGGAATCAAAGCAAAGCGTCACTTCGTTCGTGGCGCTCAGCTTCTCACACAAGCTAGATCTTCCAAAAACAAATCCAGATCCGCAATCAACAACCTCGCAACCGAAGCATTAGCCGAAGCAGAAAAAGCGATCGAACTCGATCCTAAAGACGCTGCTTCTTATCTTCTTAAAGCTATGATTCTCGATCTTCAAGGTTTTCGAACTTCCGCTCTTGAATCGCTTGATGCAGCTTTATCTCCTCTCGCTGCTGGTTCTCTTGCAAAAGATGAACGTGGTGATGCGTTGTATAAGAGAGCTGAGTTGAAACTCGCGACGAGTGAACGCGGACGAGTTGACTCGGCTTTAGCTGATTTAACTGAGTCGGTTATTTTGAGTCCTAAGAACGCGAAAGCTTGGTGTGCGTTGGGAGAGTGTTACGAAGGAAAGAAGATGGATGAAGAAGCGAAGAAAGCTTACAAGGAAGCTCATGAATTGGAGCCACAATTTTCTGTGCCGGTTGAAGCACTTAACAGCAATGTAACAAAAGATAAAGAGCAGTCTTAA 684 0.4459 MDPKEKHAMYRDIGLQVIMILGMVIIFLSMHGIPQKFLAKLRIQNRTGIKAKRHFVRGAQLLTQARSSKNKSRSAINNLATEALAEAEKAIELDPKDAASYLLKAMILDLQGFRTSALESLDAALSPLAAGSLAKDERGDALYKRAELKLATSERGRVDSALADLTESVILSPKNAKAWCALGECYEGKKMDEEAKKAYKEAHELEPQFSVPVEALNSNVTKDKEQS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04588 227 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 79 211 - -
Trre5g04588 227 Gene3D Tetratricopeptide repeat domain 129 227 IPR011990 GO:0005515
Trre5g04588 227 SMART tpr_5 176 209 IPR019734 GO:0005515
Trre5g04588 227 SMART tpr_5 139 175 IPR019734 GO:0005515
Trre5g04588 227 Pfam Tetratricopeptide repeat 176 209 IPR001440 GO:0005515
Trre5g04588 227 Gene3D Tetratricopeptide repeat domain 36 128 IPR011990 GO:0005515
Trre5g04588 227 SUPERFAMILY TPR-like 82 211 IPR011990 GO:0005515
Trre5g04588 227 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04588 Trre-Chr5 47746127 47750381 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04588 - - gmx:100799725 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04588 5 47746127 47750381 Trre5g04588 5 47746127 47750381 ECH