Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04587 ATGCACGGTAGACCTCGTAAACCGTTGAAAGAAGAAGACGAATCAGTTTTATCAGCCAAAGCTGAAAAGCTTCGTTTACTTCAATCTCAGTTCCTCGCTAATCACCAAAATCGCATATATAGCAAAGAAGCTTTAGATTTGAGCGCGAAGCTTCTAGAAAATAATCCAGAATGTTACACAGCTTGGAATTACAGAAAACTCGCCGTTCAACATAATCTCTCTCAATCTGATTCGGATTCAGTTGCATCTCTCTTCGATCAGGAGCTGAAATTGGTTGAGAATGCGTTGAGGAAGAATTTTAAGTCCTATGGTGCTTGGCATCATAGAAAATGGGTGCTCAGTAAAGGGCATTCATCCATAGATCACGAAATGCGGCTATTGAATGGTTTTCAGAAGGCCGATCCGCGGAATTTTCACGCATGGAATTACCGGAGGTTTGTTACCGATCTAATGAAAAGATCGGATGAGGATGAGTTGAAATACACGGAGGAAGTGATAGGGGAAAATTTTAGTAATTACTCTGCGTGGCATAATAGGAGTGCAATTTTATCTAATTTACTTAAAAGAAAGGCTGAAGGATTTTCACACAAAGAAAAAGTTTTGCAAGAGGAGTATGAACATGTCCGCAATGCTATTTTTACTGACCCAGATGATCAGAGTGGTTGGTTTTATCATCTTTGGCTTATTGATCAAACCGTGAAAAATGATGCTCCCCTACTCGTTTCATCTTGGCCATCTCATGGATCTACTGTAACACTGAATGGAAATGGAAACAACCGTCTTCATGGTTTGTCTCTGTTGAATAGTACACTATCAGACACTACAACGCTTCCCATCATTCTATATTTTAATCAAGCTGTTGAAGGCATCAACTCGTCTACAGTGGCCATTAAATCTGAAATCTTGAAAGAGGATCTTGTTTGGAAACCACTTTCAGCAAACAACTCGAGTACTGCTCAAGTTTGGGTTGTGTACCTAAAACTTGGAAATATGGAACTCCAACTATCGAAAACCTACTATATAGAGATCACCATTGGACATTCTACGGGTATTGTATCTTCAAATGGATATCATTATGGGGATCCTTCCCAAATTGCTTTTGAATTGTGTGTACAGACCGCTCATACAGAACCTGTTGAAGGGCAATATCGAAAGTTGGCTTCGTGGAAGGATAGTGATTTCAAAAAAATTGATCATTTTGAAGAATCGAATTCCGTTGCATCTACTGATCACCACATTCCAACAACTTCCAATTGGTGCAGGGAGGCAATTGATGAAGAAATAACAAATTATCAGGATTTGTTGTCAGACTGTAAAATTGGAAAGCTTACACTTGCAAGACTTCTTACTGCTCTTGATTTTTTATCACCTCAACATGATAAAAGAAAAAATCACACCGAAGAAGTTCTTAAACTTTACACTGAACTGATGAAGTTGGACCCAACACATTCTCTATACTACAAGGATGAGCATAGTCTGGTATTACTTCAGCAGATAACTTCATCTGAAGAGTCTTTACTACCACATTGCCACTACTATAAAGATGCAACAGAAACAAATACTAGTTATGTCTGTCTACGATTACAAAATCTATCATTGTCACGGATGGGGTCCATCAAAAATTTACTGTGGGTGCAAATGCTAGACCTTAGCCACAATGAACTTCGATCACTTGAAGGGTTGGAGGCCATGCAACTTCTATCTTGCTTAAATCTGAGTCATAATAAACTTGGTAGTTTTACTGCTCTGGGCCCTCTCAGATCGCTCAAGTCACTTAAAGTGTTGAATATCTCTTACAATGAGCTAGGCTCTCACTCAATTGACACAAGAAGATACCTATGCTCTTCTCCTTTAGCACATACTGAAGTATTTGCCTTGGACCATTTTGAAATCCTTTGCGGAAGTTATAGTGCCACAAAGTTTTGGGAAGCTTTCTTGATCTTTGAAAGCTTGAACTTGACAGATTTGAACATTACAGGAAATGCAGTTGCAGATGAGAACTTCACTTCATTTATCGTAAAAGTTCTACCTAGTCTAAAGTACCTAAATGATAAAGAGTTATAA 2064 0.3857 MHGRPRKPLKEEDESVLSAKAEKLRLLQSQFLANHQNRIYSKEALDLSAKLLENNPECYTAWNYRKLAVQHNLSQSDSDSVASLFDQELKLVENALRKNFKSYGAWHHRKWVLSKGHSSIDHEMRLLNGFQKADPRNFHAWNYRRFVTDLMKRSDEDELKYTEEVIGENFSNYSAWHNRSAILSNLLKRKAEGFSHKEKVLQEEYEHVRNAIFTDPDDQSGWFYHLWLIDQTVKNDAPLLVSSWPSHGSTVTLNGNGNNRLHGLSLLNSTLSDTTTLPIILYFNQAVEGINSSTVAIKSEILKEDLVWKPLSANNSSTAQVWVVYLKLGNMELQLSKTYYIEITIGHSTGIVSSNGYHYGDPSQIAFELCVQTAHTEPVEGQYRKLASWKDSDFKKIDHFEESNSVASTDHHIPTTSNWCREAIDEEITNYQDLLSDCKIGKLTLARLLTALDFLSPQHDKRKNHTEEVLKLYTELMKLDPTHSLYYKDEHSLVLLQQITSSEESLLPHCHYYKDATETNTSYVCLRLQNLSLSRMGSIKNLLWVQMLDLSHNELRSLEGLEAMQLLSCLNLSHNKLGSFTALGPLRSLKSLKVLNISYNELGSHSIDTRRYLCSSPLAHTEVFALDHFEILCGSYSATKFWEAFLIFESLNLTDLNITGNAVADENFTSFIVKVLPSLKYLNDKEL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04587 687 Gene3D Ribonuclease Inhibitor 508 687 IPR032675 -
Trre5g04587 687 Gene3D Protein prenylyltransferase 1 249 - -
Trre5g04587 687 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 498 - -
Trre5g04587 687 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 200 234 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 ProSiteProfiles Leucine-rich repeat profile. 544 565 IPR001611 GO:0005515
Trre5g04587 687 ProSiteProfiles Leucine-rich repeat profile. 566 587 IPR001611 GO:0005515
Trre5g04587 687 Pfam Protein prenyltransferase alpha subunit repeat 156 186 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 Pfam Protein prenyltransferase alpha subunit repeat 122 147 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 Pfam Protein prenyltransferase alpha subunit repeat 86 114 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 Pfam Protein prenyltransferase alpha subunit repeat 201 231 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 84 118 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 SUPERFAMILY L domain-like 518 603 - -
Trre5g04587 687 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 154 188 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 119 153 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Trre5g04587 687 FunFam Geranylgeranyl transferase type-2 subunit alpha 1 240 - -
Trre5g04587 687 PRINTS Leucine-rich repeat signature 589 602 - -
Trre5g04587 687 PRINTS Leucine-rich repeat signature 545 558 - -
Trre5g04587 687 FunFam Rab geranylgeranyl transferase like protein 503 687 - -
Trre5g04587 687 SUPERFAMILY Protein prenylyltransferase 17 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04587 Trre-Chr5 47728355 47745344 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04587 K14050 - gmx:100807900 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04587 5 47728355 47745344 Trre5g04587 5 47728355 47745344 ECH