Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04586 ATGTCTACCACTAATGAAGATTTCCAAGGTGTTTCAAATTGTTATGTGTTCAAGAGCCGATTGCAAGAGTATGCTCAGAAAGCGGGACTCCCCACACCTGTGTATGAAACTATCAAGGAAGGGCCTTCCCATGAACCTTCTTTCAGGTCAACAGTGGTTGTGAATGACGTTCGGTATGATTCTTTGGTTGGATTTTTGAACCGTAAAGCCGCAGAGCAGTCAGCTGCTGAGGTTGCTTTGATGGAGTTGGCCAAATCCGGTGCAGTTAATCAGTCCATCACTCAGCCTGTTCATGAAACTGGATTGTGCAAGAATTTACTTCAGGAATATGCACAGAAGATGAATTATGCAATGCCAACGTATCAGTGCAAAAAGGATGATAAACCAGGTAGAACACACTTATTTTCATGTACAGTCGACATTGGAGGGATTCTTTATATTGGGGGAGTAACAAAAACAAAGAAGGAAGCGGAGATAAAAGCCGCAAGAACTGCTTTATTAGCTATCCAGAGAAATGCGTCTCAGTCTTCTGAAAACCAATTTGGCCCTTTGACTGTCATTCCTTCCAGGAAAAGGGCAGCAGATTCTGTTGCTGATGAGGCTTCGAAAGCTCCAAAGCCTAAGAAATCACGCTTTAAAAGGAAGTGTTCCAAGAGGAAACAGTCAAGAGATAAGAAGCGCCGTATTCAAGCTGCCAATGCTGGTGATGGAGCAAATATCAATCCCGAGGTAGAATCAGTTAATGGTGAATCTGGCCTCCAGGAAATCAAATCTGAAGCAGCATTTACTTCGGAAGCCATGAAGAATTCTGAGAATGGTGTATCAACCACAAATATCAATCCCGTGGTAGAATCACTAGCAACTGTTAATGGCGAATCTGGCCTCCAGGAAATCAAATCAGAAGCGGCATTCCCTTCAGAAGCCATGAAGATTTCTGAGAATGGAGTATCAACTGCAAATATCAATCTCGGGGTAGAATCACTTGCAAGTGTTAATGGCGAATCTGGCCTCCAGAAAATCAAATATGAAGCAACATTACCTTCAGAAGTCACGAAGAATCCTGATGAAACAGCATTACCTTTAGAAGTCACGCAGAATCCTGAGAATGGTGTATCAACTACAAAGATCAATCTTGGGGTTGAATCACTTGCGAGTGTTACTGCTGAATCTGGCCTCCAGGAAATCAAATCTGAAGCAGCATTGCCTTCGGAAGCCATAGAGATTTCTGAGAATGGAGTATCAACTACAAATATCAATCCCGGGGTAGAATCACTAGCAAGTGTTAACGGTGATTCTCGCCTCCAGGAAATCAAACCCGAAGCAGCATTGCCTTCGGAAGCCATGAAGAATTCTGAGAATGGAGTATCAACTAATCATCACGAGAAAGAGACATCAGCTGGAGACGGGTCATATGCTTTGAATAATCAAAAGGTTTTCGAAAATGGGAAGTCAGCAGAATTGCAATCCAAAGAGGACAATCTTGGAAATGTTGTTACAGAAGTGGTGTTCGCGCCTAACGGAGACATGCCGACAATGAGTGTGGAGACGAACGAACAGCGTTGTCATGGAGATATCGTCTTTGGAGAATGA 1590 0.4314 MSTTNEDFQGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVVVNDVRYDSLVGFLNRKAAEQSAAEVALMELAKSGAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPTYQCKKDDKPGRTHLFSCTVDIGGILYIGGVTKTKKEAEIKAARTALLAIQRNASQSSENQFGPLTVIPSRKRAADSVADEASKAPKPKKSRFKRKCSKRKQSRDKKRRIQAANAGDGANINPEVESVNGESGLQEIKSEAAFTSEAMKNSENGVSTTNINPVVESLATVNGESGLQEIKSEAAFPSEAMKISENGVSTANINLGVESLASVNGESGLQKIKYEATLPSEVTKNPDETALPLEVTQNPENGVSTTKINLGVESLASVTAESGLQEIKSEAALPSEAIEISENGVSTTNINPGVESLASVNGDSRLQEIKPEAALPSEAMKNSENGVSTNHHEKETSAGDGSYALNNQKVFENGKSAELQSKEDNLGNVVTEVVFAPNGDMPTMSVETNEQRCHGDIVFGE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04586 529 PANTHER RIBONUCLEASE III 14 226 IPR011907 GO:0003723|GO:0004525|GO:0006364
Trre5g04586 529 Pfam Double-stranded RNA binding motif 18 82 IPR014720 -
Trre5g04586 529 Pfam Double-stranded RNA binding motif 104 167 IPR014720 -
Trre5g04586 529 Gene3D - 17 98 - -
Trre5g04586 529 MobiDBLite consensus disorder prediction 440 471 - -
Trre5g04586 529 SMART DRBM_3 103 170 IPR014720 -
Trre5g04586 529 SMART DRBM_3 17 84 IPR014720 -
Trre5g04586 529 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 102 171 IPR014720 -
Trre5g04586 529 SUPERFAMILY dsRNA-binding domain-like 16 83 - -
Trre5g04586 529 FunFam double-stranded RNA-binding protein 1 14 90 - -
Trre5g04586 529 SUPERFAMILY dsRNA-binding domain-like 104 171 - -
Trre5g04586 529 MobiDBLite consensus disorder prediction 207 226 - -
Trre5g04586 529 CDD DSRM_AtDRB-like_rpt1 16 84 IPR044450 GO:0003725
Trre5g04586 529 MobiDBLite consensus disorder prediction 173 252 - -
Trre5g04586 529 Gene3D - 99 171 - -
Trre5g04586 529 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 16 85 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04586 Trre-Chr5 47722989 47726356 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04586 - - tpra:123915838 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04586 5 47722989 47726356 Trre5g04586 5 47722989 47726356 ECH