Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04578 ATGGTGTTCTCTTCTACTCTCTCTTCATCTTTCACTCCTTTTGTTTCTCAACTTCGCAACCACTCTTTCTCCACCATAACAACTCGATCCTCCACATTCCCTTTTCGCAAATTCATCAAAACCCGAATGCAAGCTCAAACTAACACCACCGATAATGCCAAACCCAAAGAAGCTAAACTTTGGGGTGGAAGATTCGAAGAAGGTGTCACCGATGCCGTTGAACGATTCACCGAATCCGTCTCTTATGATAAACAGTTATACAAACATGATATTACTGGAAGCATAGCACATGCATCAATGCTCGCTCATCAAGGTTTGATTACTACGAGTGATAGGGATTCGATTATCGATGGATTGAGAGAAATTGAAAGGAGGATTGAGAATGGTGAGTTTAATTGGAGAGCTGATAGAGAGGATGTTCATATGAATATTGAAGCTTCACTTACTGATTTGATTGGTGAACCTGCTAAGAAGTTGCATACTTCGCGGAGTAGAAACGATCAAGTTGTTACTGATTTGAGACTTTGGTGTCGCGATGCTATTGATAAGATTGTTGGGAGTATTAAGCAACTTCAAGTTTCGCTACTTAAGTTGGCTTTGAAGAATCAAGGTCTTATTGTTCCTGGGTATACTCATTTGCAGCGTGCGCAGCCGGTTTTATTGCAGCACCTTATACTTGCCTATGTTGAAGAGATTGAGCGTGATGCTGGTCGTTTGATTGACTGTAGAGCTAGGCTGAATTTTTGCCCTTTAGGGGCTTGTGCGTTGGCCGGTACAGGGCTTCCCATTGATCGATTCATGACATCAGATGCACTGGGATTTACAGCTCCGATGAGGAATAGTATCGATGCAGTTTCTGACCGAGATTTTCTACTGGAGTTTCTCTCTGCTAATGCCATCACAGCAGTGCACCTTTCTCGGCTCGGTGAAGAATGGGTATTGTGGGCTTCAGAGGAATTTGGATTTATAACCCCAAGTGACTCTGTTTCAACAGGAAGCAGTATAATGCCCCAGAAAAAGAATCCGGATCCAATGGAACTTGTTCGTGGTAAGTCTGCCAGAATCATAGGGGGTTTGGTCTCTCTTCTCACATTGTGCAAAGGACTTCCACATGCTTACAATCGCGATTTGCAGGAAGACAAAGAACCGGTGTTCGACAGTGTTAGAACTATTTTGGGGATGCTTGAGGTCTCATCAGAGTTTGCAATGAACATTACTTTCAATCGGGAAAGAATACAAAAGGCTTTACCTGCTGGTTATCTTGATGCAACAACACTTGCTGATTATCTTGTTAAGAAGGGAGTGCCATTTAGAACATCTCACGATATAGCTGGAAAGTCTGTTGCGTTGTGTACATCGAAGAACTGCCAACTGTTGGACTTGAGTCTTGATGAGCTGAGAAGTATTAATCCAGTCTTTGAGAAGGATGTGTATGAATTTCTTGGGGTAGAAAATGCGATCCAGAAATTTATTTCTTATGGTTCGACCGGGTCTGCTTGTGTTGCCGACCAACTTGATTATTGGATAAAAAAGCTTGAAATTAAGTGA 1548 0.4231 MVFSSTLSSSFTPFVSQLRNHSFSTITTRSSTFPFRKFIKTRMQAQTNTTDNAKPKEAKLWGGRFEEGVTDAVERFTESVSYDKQLYKHDITGSIAHASMLAHQGLITTSDRDSIIDGLREIERRIENGEFNWRADREDVHMNIEASLTDLIGEPAKKLHTSRSRNDQVVTDLRLWCRDAIDKIVGSIKQLQVSLLKLALKNQGLIVPGYTHLQRAQPVLLQHLILAYVEEIERDAGRLIDCRARLNFCPLGACALAGTGLPIDRFMTSDALGFTAPMRNSIDAVSDRDFLLEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARIIGGLVSLLTLCKGLPHAYNRDLQEDKEPVFDSVRTILGMLEVSSEFAMNITFNRERIQKALPAGYLDATTLADYLVKKGVPFRTSHDIAGKSVALCTSKNCQLLDLSLDELRSINPVFEKDVYEFLGVENAIQKFISYGSTGSACVADQLDYWIKKLEIK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04578 515 CDD Argininosuccinate_lyase 79 512 IPR009049 GO:0004056|GO:0042450
Trre5g04578 515 FunFam Argininosuccinate lyase 418 489 - -
Trre5g04578 515 FunFam Argininosuccinate lyase chloroplastic 286 443 - -
Trre5g04578 515 Gene3D - 417 489 - -
Trre5g04578 515 Pfam Lyase 63 357 IPR022761 -
Trre5g04578 515 ProSitePatterns Fumarate lyases signature. 332 341 IPR020557 GO:0003824
Trre5g04578 515 FunFam Argininosuccinate lyase 58 163 - -
Trre5g04578 515 Pfam Argininosuccinate lyase C-terminal 420 487 IPR029419 -
Trre5g04578 515 Gene3D Fumarase/aspartase (Central domain) 176 505 - -
Trre5g04578 515 SUPERFAMILY L-aspartase-like 60 512 IPR008948 GO:0003824
Trre5g04578 515 PRINTS Argininosuccinate lyase family signature 250 266 - -
Trre5g04578 515 PRINTS Argininosuccinate lyase family signature 288 312 - -
Trre5g04578 515 PRINTS Argininosuccinate lyase family signature 199 219 - -
Trre5g04578 515 PRINTS Argininosuccinate lyase family signature 158 180 - -
Trre5g04578 515 PRINTS Argininosuccinate lyase family signature 332 348 - -
Trre5g04578 515 PRINTS Argininosuccinate lyase family signature 367 386 - -
Trre5g04578 515 PRINTS Fumarate lyase superfamily signature 159 177 IPR000362 -
Trre5g04578 515 PRINTS Fumarate lyase superfamily signature 204 222 IPR000362 -
Trre5g04578 515 PRINTS Fumarate lyase superfamily signature 288 315 IPR000362 -
Trre5g04578 515 PRINTS Fumarate lyase superfamily signature 332 348 IPR000362 -
Trre5g04578 515 Hamap Argininosuccinate lyase [argH]. 59 510 IPR009049 GO:0004056|GO:0042450
Trre5g04578 515 NCBIfam argininosuccinate lyase 60 507 IPR009049 GO:0004056|GO:0042450
Trre5g04578 515 Gene3D - 79 286 IPR024083 -
Trre5g04578 515 PANTHER ARGININOSUCCINATE LYASE 25 514 IPR009049 GO:0004056|GO:0042450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04578 Trre-Chr5 47639361 47642212 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04578 K01755 - gmx:100796544 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04578 5 47639361 47642212 Trre5g04578 5 47639361 47642212 ECH