Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04550 ATGCATGTCACCGGGGATCTAGGGTTTTTTAACCTGGTCCTTGTTGTGGTGGTTTGTGTGATTTTTCCGGTGATCGGATTTATAATTCGCCGGAAATGGCAGCTTGCGGTTGCTAGAAATGAAGAGATCAATAGGCTTTTGATTTTAGCCGCTGAGGAAACTGCCAGGGTTGAGAGAGAAGCGTCTTATGTGTCGGCTCCGGTGGTTTCCGCCACCACTAGCAATTATCAATGTGCTCTCTGCTATTTTCCTGCCACTGCACGCTGTGCTCAGTGCAAATCCGTTCGCTACTGTTCCACTCATTGCCAAACCGTTCACTGGCGTCAAGGTCATAAATTTGATTGTCGTCCTCTCAGCAAAACACACCAGAGCGATGGCATAATAAGTGATATTGGCAAGCGGGAAGTGGAGCAAGACTACTCTGGTATCCATGAGGAGAAATCTGAAAGTAGAGGCACAGAGTATAAAATATCCTCTGAAGATACTTCTTCTGAGATTTCATTTAGAAAGGATGATAATATTAGAGCTCGGTTTCTTGCAGAGGAAAATTTAGCAGATTCTAATTCTGAATTTTCCAGTAACTCATTTTCTGGATTTTCGGCTTCCACAAGTTCTAATGATTCATCTGATGATTCTTCTGTGTGTGAGAGTATCATCTCAAATGAGTGTGACAGATCAGAGGGACATAATTCTGCTGTTCCCACCCTTGACATTACTGATAAAACCACAAGGGATAGCAAGGTGGATGCAGCAATGTCTTCTTCACCAAAGTTTGCTAGTTTGCTTGATTCAGTCGACGGTTCTTCTGCAGTTCATAAATTAAATCATATTGCACCTGGTTCTAGAAAAGAAGAGAGGAAACTTGCATCGAATGGTGCTACAGGCTCGAGCATGTGGAAGGGGGTGAAAACTGAGCCTTCTGGATTCTGGGATGAAGCTCTTGATTCGAGAGGGATAAAAGTTGGCGATAATAATGACATTTATGGAATCCATTTTGAGGAATCCACCAGTGAAAAGAATGATTCTGGATTGTCATTTCACTTCCAATTCAGTACCATGCCTCCTTTGCATGTACGAGATACTGAGGCTAAAGAATCTTTGCCCGATGATGATCTTCCAAACTATGTTGGGAAGAATATGCCACATCCAGGATCGGCATCATCTGAGAATGACAGTATGAATTCCTTAAAGGCGAGGAGGAACCGCACATTCACCCAAAACAAAGATTTCAGTATTATTAGCAATTCTCCTAGTGGTTCAAAATCTGAAAAATTGGAATCTAAAGACAGGTCTGAGCTACCTCTATATTCTTCTTGCTCCCAATCCTCCAGTATTGACAAAGATTCAGGTTCTGCAGAGGCTACTAGTATCCATAACTTGAAATCATCTAGCTCTGTGGCATCAAATCATGTTGTGGACAACCATGGTTGCACCTTGAAGTCCACCGATATTAGAGGCCAGACACGCGAGGTTGCTGCTTCTAAATTAGCTTCTACAACTGAAGGAAATTCACATCCCAGTACAAAACATAGCAATATTGAATATGAGACTGTCACTTCTTCTCATGTTGCTAACTATTCTGCAAATTCTAAGAGTGGTTTGAAAACATCTGTTTTAAAAGTCGTTGATCAGTTTAGAGGATCGAATTTGTCAAAGCACATTTCTTTAGCTGTTGGAAGTGATATTGCTGGAAAATACAACGACAAGGTTCTTTTTCCATATGAATCGTTTGTAAAGCTTTATAACTTCAACAAGGTGGAGTTGCGACCATTCGGTCTTATAAATTGTGGAAACAGTTGCTATGCTAATGCTGTACTTCAGTGCCTAGCTTTTACACCATCCTTAACTGCTTATTTGCTTCAAGGACTACATTCTAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAATTTGAAAGATTGATTTTGAATTCAAAGGACACTAAATCTGCACTATCTCCAATGGGTATACTCTCTCAACTACAGAGTATTGGGAGTCAGCTTGGTAATGGCAAAGAAGAAGATGCACATGAATTTCTAAGGCATGCTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATCAGGTTCATTGGAGGAGGACACTACTTTAATGGGTCAAATATTTGGAGGATACCTTCGATCAAAGATAAAATGCATGAAATGTGGTGGGAAGTCCGAGCGTCATGAAAGGATGATGGATCTAACTGTTGAGATAGAAGGGGAGATATCAACACTTGCAGAGGCCCTTCGACGGTTTACAAGCACCGAGTCTTTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAGGAAGCTGACAGTTTCAGAGGCACCAAATATTCTTACAGTTGCATTGAAGAGATTTCAGTCTGGAAAATTCGGAAAGCTTAACAAGCCTATTCAATTTCCGGAAATACTTGACTTGGCGCCTTTCATGAGCGGGACCAGTGATAAGACACCCATTTACAGATTGTATGGAGTGGTTGTTCATTTGGATATTATGAATGCTGCTTTTTCTGGTCATTATGTCTGCTACGTGAAGAACATCCAAAACAAGTGGTTCAAGGTTGACGACAGTGTGGTAACAGCTGTTGATTTAGAGAGGGTCATGACAAAAGGAGCATATATGCTTTTTTATGCAAGGTGCTCTCCAAGGGCCCCAAAATTAATTAGGAACAAGATTCTATCCCCGGATTCAAAAAGTAAGGTCAATGGAAAGTCTCTGAAAGCAAGATATGTCTCAACTAATTCTGGTGCAGCTGATCCCATCAGTCGTTCCATTTCTCCCGACGGCTCACCCACCTTGGAGTCTTTCTATTCAAGGTTTCACCACCTGAAAAAGGTTTTAGAAGAAGACCCATCAAGTGATAATTCATCACTTTTCAGCAGTAATTCCGATGAAGGTTCTTGCAGTACCGATAGTACCCGTGATTCAACTAGCATGGATGACTTCTCTGATTATATTTTTGGTGATTCGGGACATGGATGGAGTAGCATGTGGGGGAATTCTGATTCTGATACGTCTTCGTCCTCCTCATCTCCCTTGAATTATAGACATTCACCCCTATCTGATATGGACAAGTATGATTCAATGTCTCCAGATGCAACTAGTTTGCGAATTCCCAGCGGTTCAAGTTCAGAGACAGATAGGGGTGGTAGTATTTCTCATTTACATTCTGACACAATTTTACAGCATAGAAAATTAGATAGTAGTAACATTAGCAGCAATAGTAGTAGTAGTAGGGACTCTGGCGCTTTTGTAAAAGTAGGATCTAACCATTCTAATGATAAGAACTCTGGTGTATCGTGTAGAAAGTCGAGGAAAAGAACAGATTGA 3378 0.4103 MHVTGDLGFFNLVLVVVVCVIFPVIGFIIRRKWQLAVARNEEINRLLILAAEETARVEREASYVSAPVVSATTSNYQCALCYFPATARCAQCKSVRYCSTHCQTVHWRQGHKFDCRPLSKTHQSDGIISDIGKREVEQDYSGIHEEKSESRGTEYKISSEDTSSEISFRKDDNIRARFLAEENLADSNSEFSSNSFSGFSASTSSNDSSDDSSVCESIISNECDRSEGHNSAVPTLDITDKTTRDSKVDAAMSSSPKFASLLDSVDGSSAVHKLNHIAPGSRKEERKLASNGATGSSMWKGVKTEPSGFWDEALDSRGIKVGDNNDIYGIHFEESTSEKNDSGLSFHFQFSTMPPLHVRDTEAKESLPDDDLPNYVGKNMPHPGSASSENDSMNSLKARRNRTFTQNKDFSIISNSPSGSKSEKLESKDRSELPLYSSCSQSSSIDKDSGSAEATSIHNLKSSSSVASNHVVDNHGCTLKSTDIRGQTREVAASKLASTTEGNSHPSTKHSNIEYETVTSSHVANYSANSKSGLKTSVLKVVDQFRGSNLSKHISLAVGSDIAGKYNDKVLFPYESFVKLYNFNKVELRPFGLINCGNSCYANAVLQCLAFTPSLTAYLLQGLHSKSCANKKWCFTCEFERLILNSKDTKSALSPMGILSQLQSIGSQLGNGKEEDAHEFLRHAIDTMQSVCLMEAGVNASGSLEEDTTLMGQIFGGYLRSKIKCMKCGGKSERHERMMDLTVEIEGEISTLAEALRRFTSTESLDGENKYHCVRCKSYEKAKRKLTVSEAPNILTVALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDKTPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVDLERVMTKGAYMLFYARCSPRAPKLIRNKILSPDSKSKVNGKSLKARYVSTNSGAADPISRSISPDGSPTLESFYSRFHHLKKVLEEDPSSDNSSLFSSNSDEGSCSTDSTRDSTSMDDFSDYIFGDSGHGWSSMWGNSDSDTSSSSSSPLNYRHSPLSDMDKYDSMSPDATSLRIPSGSSSETDRGGSISHLHSDTILQHRKLDSSNISSNSSSSRDSGAFVKVGSNHSNDKNSGVSCRKSRKRTD 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04550 1125 ProSitePatterns Zinc finger MYND-type signature. 78 115 IPR002893 -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 280 300 - -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 968 996 - -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 1049 1073 - -
Trre5g04550 1125 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 592 607 IPR018200 GO:0004843|GO:0006511
Trre5g04550 1125 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 591 896 IPR028889 -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 1080 1113 - -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 1015 1033 - -
Trre5g04550 1125 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 391 899 - -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 966 996 - -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 188 214 - -
Trre5g04550 1125 SUPERFAMILY Cysteine proteinases 587 898 IPR038765 -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 433 451 - -
Trre5g04550 1125 Pfam MYND finger 78 115 IPR002893 -
Trre5g04550 1125 FunFam Ubiquitin carboxyl-terminal hydrolase 15 69 119 - -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 381 421 - -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 363 451 - -
Trre5g04550 1125 FunFam Ubiquitin carboxyl-terminal hydrolase 15 585 904 - -
Trre5g04550 1125 Gene3D Cysteine proteinases 584 906 - -
Trre5g04550 1125 SUPERFAMILY HIT/MYND zinc finger-like 72 120 - -
Trre5g04550 1125 MobiDBLite consensus disorder prediction 142 162 - -
Trre5g04550 1125 ProSiteProfiles Zinc finger MYND-type profile. 78 115 IPR002893 -
Trre5g04550 1125 Gene3D - 66 121 - -
Trre5g04550 1125 Pfam Ubiquitin carboxyl-terminal hydrolase 591 893 IPR001394 GO:0004843|GO:0016579
Trre5g04550 1125 MobiDBLite consensus disorder prediction 1015 1125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04550 Trre-Chr5 47453842 47460559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04550 569 900 Miscellaneous Gene Families AT4G31670 50.150 7.09e-119 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04550 K11855 - gmx:100795674 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04550 5 47453842 47460559 Trre5g04550 5 47453842 47460559 ECH