Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04549 ATGAACATTAAATTGGCTACGGCCTTAACACTTTGCTATGTAATTTACATAAGCAATATCAATGCCATTGATCCATGTGCATCTCAACCAGATGACTCTGATCTCAATGTAATTCCAATGTATGGAAAATGCTCACCATTCAACCCACCCAAAGTAGACTCATGGGACAACAGAGTCATAAACATGGCTTCCAAAGACCCTGCCCGAATGAACTACCTATCGACGTTAGTAGCCCGAAAAACCGCCACTTCGGCTCCAATTGCTTCAGGCCAATCCTTCAACATCGGAAACTATGTTGTTCGGGTCAAAATCGGAACACCGGGCCAACTTCTTTTCATGGTTCTTGACACAAGTACCGACGAGGCTTTTGTCCCTAGTTCCGGATGCATTGGTTGCTCCGCGACAACTTTCTTCCCTAATGCCTCCACTAGTTTTGTCCCATTGGACTGTTCCGTTCCACAATGCGGTCAAGTCCGTGGCCTTTCATGTCCAGCCACGGGCTCTGGCGCATGTTCCTTCAACCAATCATATGCCGGCTCCACTTTCTCCGCCACACTTGTTCAAGATTCCCTTAGATTAGCTACAGATGTTATCCCTAGCTATTCTTTTGGAAGCATTAATGCTATTGCCGGTTCTTCAGTTCCAGCCCAAGGCCTTTTGGGTTTGGGCCGTGGCCCATTATCTTTGTTATCCCAATCCGGGGCAATTTATTCGGGCGTATTCTCCTACTGCCTTCCTAGTTTTAAATCTTACTATTTTTCTGGGTCACTTAAACTCGGGCCTGTGGGTCAACCAAAAAGCATCCGAACCACACCACTTCTTCGCAATCCTCACCGTCCATCTCTCTACTACGTCAATTTAACGGCAATCAGTGTGGGCCGTGTATATGTTCCTTTACAAAGCGAACTTTTAGCGTTCAACCCAAGTACCGGAGCCGGAACCATAATTGATTCAGGTACGGTTATAACCCGTTTTGTGGAACCCATTTACAACACAATCAGGGACGAATTCAGGAAACAAGTAACGGGTCCTTTTTCAAGCTTAGGAGCATTCGACACATGTTTTGTGAAAAATTACGAAACATTGGCACCGGCTATTACATTACATTTCACAGATTTGGATCTAAAATTACCATTGGAAAATAGTTTGATTCACAGCAGTTCAGGATCATTGGCATGTCTTGCAATGGCAGCTGCACCAAGCAATGTGAACTCTGTGTTGAATGTGATTGCTAATTTTCAACAACAGAATTTGAGGGTTTTGTTTGATACCGTGAATAATAAGGTTGGTATTGCCCGTGAACTTTGTAACTAG 1314 0.4429 MNIKLATALTLCYVIYISNINAIDPCASQPDDSDLNVIPMYGKCSPFNPPKVDSWDNRVINMASKDPARMNYLSTLVARKTATSAPIASGQSFNIGNYVVRVKIGTPGQLLFMVLDTSTDEAFVPSSGCIGCSATTFFPNASTSFVPLDCSVPQCGQVRGLSCPATGSGACSFNQSYAGSTFSATLVQDSLRLATDVIPSYSFGSINAIAGSSVPAQGLLGLGRGPLSLLSQSGAIYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNLTAISVGRVYVPLQSELLAFNPSTGAGTIIDSGTVITRFVEPIYNTIRDEFRKQVTGPFSSLGAFDTCFVKNYETLAPAITLHFTDLDLKLPLENSLIHSSSGSLACLAMAAAPSNVNSVLNVIANFQQQNLRVLFDTVNNKVGIARELCN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04549 437 Gene3D Acid Proteases 261 437 IPR021109 -
Trre5g04549 437 FunFam aspartyl protease AED3 77 260 - -
Trre5g04549 437 FunFam Aspartyl protease AED3 261 437 - -
Trre5g04549 437 Pfam Xylanase inhibitor C-terminal 283 432 IPR032799 -
Trre5g04549 437 Gene3D Acid Proteases 74 260 IPR021109 -
Trre5g04549 437 PANTHER ASPARTYL PROTEASES 29 430 IPR001461 GO:0004190|GO:0006508
Trre5g04549 437 Pfam Xylanase inhibitor N-terminal 98 260 IPR032861 -
Trre5g04549 437 ProSiteProfiles Peptidase family A1 domain profile. 98 432 IPR033121 -
Trre5g04549 437 SUPERFAMILY Acid proteases 91 436 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04549 Trre-Chr5 47426815 47428128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04549 79 437 Miscellaneous Gene Families AT1G77480 26.316 3.87e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04549 - - gmx:100816307 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04549 5 47426815 47428128 Trre5g04549 5 47426815 47428128 ECH