Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04546 ATGGGTGTGAAGGCATTTCTTGAAGGTGGCATTGCTTCCATTGTTGCAGGAACCACAACTCACCCATTCGACCTAATCAAAGTTCGCATGCAACTTCAAGGCCAACAAAATCTTCATCCAGCTTTCGCTTTTCATCACTCTTCATCAATTTTTCAACCTAAACCCTCTCTTTCAGGACCTATCTCTATAGGAATCCAAATTGTTCAATCAGAAGGTATCTCCGCTCTTTTCTCCGGCGTATCCGCCACCGTACTCCGTCAAACACTCTATTCCACCACTCGTATGGGTCTCTACGATGTCCTTAAACAAAACTGGACCGATCCAGAAATTGGAACAATGCCTGTTACCAAAAAGATTGTTGCAGGTTTAATAGCCGGCGGAATTGGCGCCGCCGTAGGGAATCCAGCCGATGTTGCGATGGTTCGTATGCAAGCTGATGGTCGACTTCCGGTTAATCAGCGACGGAATTATAACGGCGTATTCGACGCTATTCGGAGAATGTCGAAAAATGAAGGGATTGGTTCTCTGTGGTGCGGTTCAGCGCTTACGGTGAACCGCGCGATGATTGTAACGGCTTCTCAGTTAGCTTCATATGATCAGTTTAAGGAAATGATTTTGGAGAAAGGGTTGATGAAGGATGGATTTGGGACACACGTGGCAGCGAGTTTTGCGGCGGGTTTTGTGGCGGCTGTTGCTTCGAATCCTATTGATGTTATAAAGACTAGGGTTATGAGTATGAAGGTGGAATCTGGTGTGGAGGGTGTACCTTATAAAGGTGCATTGGATTGTGCAGTTAAAACTGTTCGTGCTGAAGGACCTATGGCTCTTTATAAGGGTTTTATTCCTACAATTTCAAGGCAGGGTCCTTTTACCGTTGTTCTTTTTGTCACACTTGAACAACTCAGGAAGCTGTTTAAGGACTTTTGA 927 0.452 MGVKAFLEGGIASIVAGTTTHPFDLIKVRMQLQGQQNLHPAFAFHHSSSIFQPKPSLSGPISIGIQIVQSEGISALFSGVSATVLRQTLYSTTRMGLYDVLKQNWTDPEIGTMPVTKKIVAGLIAGGIGAAVGNPADVAMVRMQADGRLPVNQRRNYNGVFDAIRRMSKNEGIGSLWCGSALTVNRAMIVTASQLASYDQFKEMILEKGLMKDGFGTHVAASFAAGFVAAVASNPIDVIKTRVMSMKVESGVEGVPYKGALDCAVKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQLRKLFKDF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04546 308 Pfam Mitochondrial carrier protein 113 207 IPR018108 -
Trre5g04546 308 Pfam Mitochondrial carrier protein 4 104 IPR018108 -
Trre5g04546 308 Pfam Mitochondrial carrier protein 214 306 IPR018108 -
Trre5g04546 308 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Trre5g04546 308 PRINTS Mitochondrial carrier protein signature 18 32 IPR002067 GO:0055085
Trre5g04546 308 PRINTS Mitochondrial carrier protein signature 5 18 IPR002067 GO:0055085
Trre5g04546 308 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Trre5g04546 308 FunFam Mitochondrial uncoupling protein 5 4 308 - -
Trre5g04546 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 204 IPR018108 -
Trre5g04546 308 Gene3D Mitochondrial carrier domain 3 307 IPR023395 -
Trre5g04546 308 SUPERFAMILY Mitochondrial carrier 4 301 IPR023395 -
Trre5g04546 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 104 IPR018108 -
Trre5g04546 308 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 4 304 - -
Trre5g04546 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 304 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04546 Trre-Chr5 47413101 47414027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04546 1 307 Miscellaneous Gene Families AT5G09470 57.059 2.00e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04546 K15104 - vvi:100245527 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04546 5 47413101 47414027 Trre5g04546 5 47413101 47414027 ECH