Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04544 ATGACCAACACAACTGCCGAATTGTCTCAGGGAAATAATGGTGCCCCTCCCAATAACCAATCTGGACAACCAGAGCATCAGAACTCTCGTGGTTCCACCAACAATTTGATTTTCAAGAGTGGGCCACTTTTCATATCTTCCAAAGGAATCGGATGGACATCGTGGAAGAAAAGGTGGTTCATTTTAACACAAACTTCACTTGTTTTCTTCAGAAGTGATCCAAATGCCGTCCCTGTGAAGGGAAATGAAGTGAATTTGACCCTTGGCGGCATTGATCTCAACAATTCAGGCAGCGTTATTGTTAAAGCAGATAAGAAGCTTTTGACTGTTCAATTTCCCGATGGTCATGATGGACGCGCTTTCACACTTAAGGCTGAAACTGCAGACGACTTATACGAGTGGAAGACTGCTCTCGAGAAAGCATTGGCACAAGCACCAAGTGCTGCCAACACGACGGAGCAAAATGGTATCTATAGGAAAGATCAGACTGATCCAATTGATATTTCTTTGGACCAGTTGAATGAAAAAGAACCAACCAAATCTACTGTAATTGGCCGGCCAATTTTACTTGCTTTGGAGGATGTCGATGGAACTCCATCTTTTTTGGAGAAAGCGCTGAAATTTTTGGAAGAGCATGGATCCAGGGTAGAAGGTGTCTTGCGACAAGCAGCTGATGTTGATGATGTTGAACGTCGAGTTCGGGAATATGAACAAGGAAAAATTGAGTTTGCTCCGGATGAAGATGCACATGTCATCGGTGATTGTATTAAGCATGTTCTTCGAGGATTGCCATCTTCTCCGGTACCTGCATCTTGCTGTAAGGCACTGTTAGAAGCTTGCCGAACCGAACGTAGTGTTAGGGTTGCTTCTATGCGTGCAGCGATAAATGACACTTTCCCTGAACCAAACCGCCGCTTATTGCAAAGACTACTATTGATGATGCAAACTGTAGCTTCACAGAAAGCTGTGAACAAAATGAGTTCTTCAGCTGTGGCAGCCTGCATGGCACCATTACTTCTCCGTCCCCTTCTAGCTGGAGAGTGTGAAATCGATAATGATTTTGATGTAGGTGGTGATGGTTCTGTTCAACTTTTACAAGCAGCTGCAGCTGCTAACCATGCCCAAGCAATTGTTATAACTTTATTAGAAGAATATAACAGCATATTTGGGGAAGGTTCTGTGTCGCCTGATATATACACCGACTCAGAAGAAGAAAGTGGATCTGAGAGTGAGGAGGGTACTGACGATGATATGTCCTATGATGAGGATTATGACGATGAACAAGATGAATCAATACACGAGTCTGATGAGGAGGAAGATGACGTTGTCAGCGGCGAATCCTACACTGAAACTGGATCTGAGGCTGATGATTATGATGACAAGGATCACGATCATTCTCATTCAAGTTCAAAATCCTCAGATGTGAGTGAAGAAAATAAGGTCCGTCAAAAGTCAATAAAGTCACGTGAAGGCTCACCGACTCAACATGAAAACGTCAAAAGCAGTGAAAATGTCAGGAGTCCAAAGAAGGCTGCTAATGTCGATCAGTCCAATAAGTCTGCTGATACAGTTGGAGAAGCTTCCACTGATCTAGCTGGTATGCATACTTCACATTCTCCTAGCCCTTCACATATGAAAAAATCTGCAACCATGTCCAATGGCCCAGCACCTCGGCACCGAAACACGTTGGGGCGCACCTCTGCAAGGAAGAACCTCTCCATGGAATCGATTGATTATTCTATTGAAGAGGATGATGAAATTGAAAGGCTCGAAGCTGCTAGGAACGAACTGCAAACCCAAATTGCAGATGAGGTGAAGGCAAATGAAAAGTTTCAATCTAAGATAGATGAACGTAAGAAAGACTTGCAAGAGCGGCGTTTGCAACTTGAGCAAGATGTTGCTAAACTGCATGAACAGCTGCACAAGGAGAAGAGTTCTCGGGCAACTCTTGAGACTAGGGCAGAACTTGAGGAATTAGCTCTGGTAGAAGTGGATCTTTCCAACTTAGAGCGGATGGTTGAGGAGCTTGGGCAGCGGCTTAATATTAAACTCGAGCATAATCATGGATCTGCTTCAGATATCAGTAAACCATCACGTCAGTTATCAAATCAGGAAAGAAAAATGAAACATAAGGGAGATGCTGATGTTTCTGCCGCATCACAAACCGAAAGGTCAATAAGTAATAAGGATAAGTCTTATCTTAGTGGAGGAGAAAGTGATACTGAGAGAAAACCAGAACCAAACAAACAGCTACAAACTAGTTCCAAGAGATCTTCTAGTTCAAAGGGTGAGGTGGGCCGAAATCAAGCTGTAAATGAGCTGCAAAACGCGGATAGAGGCCGAGAGTCGAGTCAATCTTCACGCAACCAGGATAAAGGAAAAGGATCTGAGCGTCACCAAGCACTTTCATCCCCAAAAGGTAAGCATCAAGGATCTGATGTGCCAAACCCAGAAAAGGGGGTTAGAGTCATAGACAGTTCCCAGTCACTCTCGGAGAAAAGATCAAGCAAAGGCAAATCAAATCAAAATTCCGAGAAACTAAAAAAATCAGATAGTCAACCAGGCTACCGCTCAGAAGGATGGGATCAACATCCAACATACTTGGAAAGAGGAAGGTCAGAAGGCCATCATCAGAATTTTAATGTGGATAAAGGTCGATGA 2661 0.4359 MTNTTAELSQGNNGAPPNNQSGQPEHQNSRGSTNNLIFKSGPLFISSKGIGWTSWKKRWFILTQTSLVFFRSDPNAVPVKGNEVNLTLGGIDLNNSGSVIVKADKKLLTVQFPDGHDGRAFTLKAETADDLYEWKTALEKALAQAPSAANTTEQNGIYRKDQTDPIDISLDQLNEKEPTKSTVIGRPILLALEDVDGTPSFLEKALKFLEEHGSRVEGVLRQAADVDDVERRVREYEQGKIEFAPDEDAHVIGDCIKHVLRGLPSSPVPASCCKALLEACRTERSVRVASMRAAINDTFPEPNRRLLQRLLLMMQTVASQKAVNKMSSSAVAACMAPLLLRPLLAGECEIDNDFDVGGDGSVQLLQAAAAANHAQAIVITLLEEYNSIFGEGSVSPDIYTDSEEESGSESEEGTDDDMSYDEDYDDEQDESIHESDEEEDDVVSGESYTETGSEADDYDDKDHDHSHSSSKSSDVSEENKVRQKSIKSREGSPTQHENVKSSENVRSPKKAANVDQSNKSADTVGEASTDLAGMHTSHSPSPSHMKKSATMSNGPAPRHRNTLGRTSARKNLSMESIDYSIEEDDEIERLEAARNELQTQIADEVKANEKFQSKIDERKKDLQERRLQLEQDVAKLHEQLHKEKSSRATLETRAELEELALVEVDLSNLERMVEELGQRLNIKLEHNHGSASDISKPSRQLSNQERKMKHKGDADVSAASQTERSISNKDKSYLSGGESDTERKPEPNKQLQTSSKRSSSSKGEVGRNQAVNELQNADRGRESSQSSRNQDKGKGSERHQALSSPKGKHQGSDVPNPEKGVRVIDSSQSLSEKRSSKGKSNQNSEKLKKSDSQPGYRSEGWDQHPTYLERGRSEGHHQNFNVDKGR 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04544 886 MobiDBLite consensus disorder prediction 838 855 - -
Trre5g04544 886 ProSiteProfiles PH domain profile. 36 143 IPR001849 -
Trre5g04544 886 MobiDBLite consensus disorder prediction 735 750 - -
Trre5g04544 886 Pfam PH domain 39 142 IPR001849 -
Trre5g04544 886 Coils Coil 580 639 - -
Trre5g04544 886 SMART PH_update 37 145 IPR001849 -
Trre5g04544 886 MobiDBLite consensus disorder prediction 454 496 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 684 886 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 718 734 - -
Trre5g04544 886 Pfam RhoGAP domain 199 342 IPR000198 GO:0007165
Trre5g04544 886 CDD RhoGAP 199 337 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 863 886 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 1 33 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 497 574 - -
Trre5g04544 886 Coils Coil 659 679 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 822 837 - -
Trre5g04544 886 CDD PH 39 138 - -
Trre5g04544 886 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 13 804 - -
Trre5g04544 886 SUPERFAMILY PH domain-like 21 143 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 392 576 - -
Trre5g04544 886 SUPERFAMILY GTPase activation domain, GAP 198 391 IPR008936 -
Trre5g04544 886 Gene3D Rho GTPase activation protein 167 390 IPR008936 -
Trre5g04544 886 MobiDBLite consensus disorder prediction 751 783 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 402 445 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 784 804 - -
Trre5g04544 886 MobiDBLite consensus disorder prediction 700 717 - -
Trre5g04544 886 Gene3D - 24 144 IPR011993 -
Trre5g04544 886 SMART RhoGAP_3 196 386 IPR000198 GO:0007165
Trre5g04544 886 ProSiteProfiles Rho GTPase-activating proteins domain profile. 190 389 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04544 Trre-Chr5 47405921 47412148 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04544 - - gmx:100796201 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04544 5 47405921 47412148 Trre5g04544 5 47405921 47412148 ECH