Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04542 ATGAAATTCTCAATAATCCAGTGTTGCAGACACAGGCAACTTAACTGTGTGACTTCATCTTCATCATTACCATGGATATCTCCTCTTAACTTTACAAAACCTATAAAACCTAAACTAGATCCACCACCTGAAATAACTGTAACTGAAACAAGGAAAAAGAACAAATACATCACTCATGATGTTGCTATCAATTTAATCAAACGAGAGAAAGATCCACAACATGCTTTGAAAATATTTAACATGGTATCTGAACAAAAAGGTTTTAATCACAACAATGCTACGTATGCGTCGATTTTACAAAAGCTTGCTCAATTTAAGAAGTTTCAAGCCGTTGAACGAGTTTTGCGTCAAATGACTTATGAAACTTGTAAATTTCATGAGGGTGTGTTTATTAATCTAATGAAGCATTATTCGAAATGTTGTTTTCATGAAAAAGTGTTGGATACTTTTTTCTCTATTCAGACAATTGTTCGTGAAAAGCCCTCTCCGAAAGCTATTAGCTCGTGTCTTAATCTTTTGGTTGATTCGAATCGGGTTGATTTGGCGCGGAAGTTGCTTTTGCATGCCAAGAGGAGTTTAACTTATAAGCCTAATGTCTGTATTTTCAATATTTTGGTGAAGTACCATTGTAAAAATGGGGATCTTGAATCTGCTTTTGAAGTTGTTAAAGAAATGAGAAACTCTAAGTATTCATATCCTAATGTAATTACCTACTCGACCTTGATGGATGGTCTCTGTCGAAATGGGAAACTGAAAGAGGCTTTTGAACTTTTTGAGGAAATGGTTTCGAAGGATCGGATTGTGCCTGATCCTCTTACTTACAATGTTTTGATCAATGGATTTTGCCGCGGAGGGAAACCTGATCGCGCTAGGAATGTAATTGAATTTATGAAAAATAATGGTTGTTGTCCTAATGTATTCAATTACTCTGCTCTAGTGGATGGATTATGTAAAGCGGGGAAACCGCAAGATGCAAAAGGGGTTTTGGCTGAGATGAAAAGTTCTGGTTTGAAACCAGATACAGTTACCTACACTTCTTTGATCAATTTCTTTTGTAGAAATGGACAAATTGATGAGGCTATTGAGTTGCTTAATGAAATGAAGGAAAACGAATGCGAAGCTGATACTGTTACATTCAACGTGATACTTGGAGGCTTGTGCAGAGAAGGTAGATTTGATGAGGCTTTGGATATGATTGAGAAACTCCCACACCAGGGTATCTATTTGAACAAAGGTAGTTATAGGATTGTGCTAAATTCCTTAACGCAAAAATGCGAGTTAAGGAAGGCGAAGAAATTGTTAGGGCTAATGCTAAGTAGGGGATTTGTACCTCATTATGCTACCTCAAATGAATTATTGGTTCGTCTTTGTAAAGAAGGCATGGCTAACGATGCTGCTTCGGCTCTATTTGACTTGGTGGATATGGGGTTCCAGCCACAACTTGATTCTTGGGAACTTTTAATTGAATTAATCTGTAGGGACAGAAAGTTACTGTATGTTTTTGAGCTACTTGATGAATTAGTGACAGCAAATTCTTGA 1539 0.3671 MKFSIIQCCRHRQLNCVTSSSSLPWISPLNFTKPIKPKLDPPPEITVTETRKKNKYITHDVAINLIKREKDPQHALKIFNMVSEQKGFNHNNATYASILQKLAQFKKFQAVERVLRQMTYETCKFHEGVFINLMKHYSKCCFHEKVLDTFFSIQTIVREKPSPKAISSCLNLLVDSNRVDLARKLLLHAKRSLTYKPNVCIFNILVKYHCKNGDLESAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGKLKEAFELFEEMVSKDRIVPDPLTYNVLINGFCRGGKPDRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKPQDAKGVLAEMKSSGLKPDTVTYTSLINFFCRNGQIDEAIELLNEMKENECEADTVTFNVILGGLCREGRFDEALDMIEKLPHQGIYLNKGSYRIVLNSLTQKCELRKAKKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAASALFDLVDMGFQPQLDSWELLIELICRDRKLLYVFELLDELVTANS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04542 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Trre5g04542 512 Pfam PPR repeat 195 226 IPR002885 -
Trre5g04542 512 Pfam PPR repeat 300 333 IPR002885 -
Trre5g04542 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Trre5g04542 512 SUPERFAMILY TPR-like 162 400 IPR011990 GO:0005515
Trre5g04542 512 Gene3D Tetratricopeptide repeat domain 390 512 IPR011990 GO:0005515
Trre5g04542 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Trre5g04542 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Trre5g04542 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Trre5g04542 512 Pfam PPR repeat family 233 283 IPR002885 -
Trre5g04542 512 Pfam PPR repeat family 339 388 IPR002885 -
Trre5g04542 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Trre5g04542 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Trre5g04542 512 Pfam PPR repeat 413 442 IPR002885 -
Trre5g04542 512 Gene3D Tetratricopeptide repeat domain 44 158 IPR011990 GO:0005515
Trre5g04542 512 Gene3D Tetratricopeptide repeat domain 159 283 IPR011990 GO:0005515
Trre5g04542 512 Gene3D Tetratricopeptide repeat domain 284 389 IPR011990 GO:0005515
Trre5g04542 512 NCBIfam pentatricopeptide repeat 309 341 IPR002885 -
Trre5g04542 512 NCBIfam pentatricopeptide repeat 273 306 IPR002885 -
Trre5g04542 512 NCBIfam pentatricopeptide repeat 377 410 IPR002885 -
Trre5g04542 512 NCBIfam pentatricopeptide repeat 413 444 IPR002885 -
Trre5g04542 512 NCBIfam pentatricopeptide repeat 236 270 IPR002885 -
Trre5g04542 512 NCBIfam pentatricopeptide repeat 342 375 IPR002885 -
Trre5g04542 512 NCBIfam pentatricopeptide repeat 201 234 IPR002885 -
Trre5g04542 512 PANTHER OS03G0856100 PROTEIN 51 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04542 Trre-Chr5 47401260 47402798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04542 234 511 Glycosyltransferase AT1G05670 28.777 9.31e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04542 - - gmx:100790966 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04542 5 47401260 47402798 Trre5g04542 5 47401260 47402798 ECH