Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04540 ATGCCTTCCTCTTCCTCCACTCCCACACTCTACTCTTCTTCCAAATTCTTCATCTCCACCTCAACATTACGACGTCGTTTACCCCTTGTTGGCGCGTTTTGCATGCTCACTCTAGGAATCTCCAATCTCTACTCTCCCTTGTATTCCTCTGCCCTCAAAACAGGATCAAAATTGAGTAGCAGGTTTTCAACAAAGAGTAGTAATTTAATCAGAATGGAAGGAAATACCAATAACACCACTGTTCCAAGCATTGTTGTATATGTTACCGTTCCCAACAAAGAAGCTGGTAAGAAATTGTCTGAAAGCATTGTCAAAGAGAAGCTTGCAGCTTGTGTCAACAGAGTACCGGGTATAGAATCGGTATATCTGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATAATCAAGACCAGGCAATCCCTTCTGGAAGCACTGACAGATCATGTCAAAGCAAATCATGAATACGATGTGCCAGAGGTAATCTCCTTACCCATCACTGGGGGAAATCTCAAATATTTAGAATGGTTAAAAGAGAGCACAAGGGAGTGA 558 0.4229 MPSSSSTPTLYSSSKFFISTSTLRRRLPLVGAFCMLTLGISNLYSPLYSSALKTGSKLSSRFSTKSSNLIRMEGNTNNTTVPSIVVYVTVPNKEAGKKLSESIVKEKLAACVNRVPGIESVYLWEGKIQTDSEELLIIKTRQSLLEALTDHVKANHEYDVPEVISLPITGGNLKYLEWLKESTRE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04540 185 PANTHER DIVALENT CATION TOLERANCE CUTA-RELATED 45 185 IPR004323 GO:0010038
Trre5g04540 185 FunFam Protein CutA 1, chloroplastic 72 185 - -
Trre5g04540 185 Gene3D - 75 185 IPR015867 -
Trre5g04540 185 Pfam CutA1 divalent ion tolerance protein 84 181 IPR004323 GO:0010038
Trre5g04540 185 SUPERFAMILY GlnB-like 83 184 IPR011322 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04540 Trre-Chr5 47391270 47393747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04540 K03926 - gmx:100792337 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04540 5 47391270 47393747 Trre5g04540 5 47391270 47393747 ECH