Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04483 ATGGGGGCAGAAGCACAACATTCTAGAAGCTTAATCCACAAAATCTACGCTCCATTATCCAACGAATTTCCATTCGCAACACCTCTTCCTTCTCTCAGAACAAACGAACTCGAACTCGTACGAAGCGTTTTACGAATGCTACAAGGCTTTTCGTCTTCGTTATTCTCTTGGGATCACATTGAAAACCGTTTTCGTGTCAAAAATGGAGTTTATGTGACACATTTGTCCCTGAAAAGTCTTCATTCACTTCTTAATCAATTCATTCACGCTGCAACGTGTCTTCAAATTGTTGAGATTACGATCAAGAAGATTGAAATTGCAGTGCCAAGACCTCCTCCTACTTTGAAAGCGTTTGTTACTTCTGCTTCTGAGTGGCTTCAGCGGTTACGGAATATTGCATTGAAGGAGGAAGTGTCTACTGGCAATGTAGATGGCATATCCACTCCTACTTTGTTAGGGTTCAAAAATTCTTTATCGAGTCTTTGCTCGGGTGCTGAGTTCCTATTGCGAATAGTTCATGAGGCCATCCCTGATGTATATTTTGAGTTTGGGGCATCTGTGCCTGCAGCAGACTTGGCTGTTCATGTTCTTGACTATCTTCATAAGAAGCTTGAAGAAATGTGTCTTGTACAAGGTGGCGAGGAGGAAGCTTATCTCATGGTACTTTACATGTATGTGGGAAGCTTGTTGCCATATATTGAGGGTCTTGATTCCTGGCTTTTTGATGGAATACTTGATGATCCTTCTGATGAGATGTTCTTTTTTGCTAATAAAGAGGTCTCAGTTGCTGAGGCTGACTTCTGGGAAAAGAGTTATCTAATAAAAAAACTACAACATGGTAAGTTAGATACTGAGTTGTCTTCCACAAATTATGCCGGTATGCCGGCTTCTAATAAGAAGAAGGAAATGGGCATGAGGGATTCCATCTCTTCGTCTAGTACAATTCAAGGAAAAGAGCAGAGCATTAGAGACTGTCCAGCTTGTCCTTTGTTTATTAAGGATTTAGCTAAGTCAATAGTTTCTGCGGGAAAATCTTTGCAGCTGATGCGCCATGTCCCAACTTCCTTAGCAGTACGTAGCAAAAGAAGTAATTTTAAGTTTGAAAGAACTCAATCTTTAAACTATGGTTTATCTCCTTCTCATAGAGTGGCTGGGCTAACGCTGTCAGAAATTTTTTCTGTATCACTAGCTGGACTTATTGGTCATGGTGACCATGTTTGTAAATACTTTTGGCAAGATGATTGGCATGAATCTGTGTCTGTTTCTCTCTTTGCATCTTATTTAAATAGATATGCGGAAAAAACAGACAATGAAAACTTAACTGCTTCACCACACTCGGAGAAGATTTGGTACAAGTTCTTGATTGATACATTATTTCAAAAAGGATCAGTTGATTTGAAGCCAAAATATGAAAATGATGGCAATGGAGATTCTACAGGGGATAAAGTTGTTAACGAGGAATCTTTTGCCTTGAGGTCATGCTTACAAAATCCAGTTATTACCGTTTCTCGAAAAACAATTGGAAACAATGGGGATGCCTTGAAAACATTGAATTTATCTCAAAATTTCTGCTTGCCTTCTTTAAATGACGCGGGTTTAAGAAAGGCTATATTTGGTGCAGAAAGTACATCATTTTCTGATAGTGAAGGAACAAACTATTCGTTTGGTTTTCAGTATGATGAATCCAAATACCTTCACTCACATGATACGATGAAGCTGTTAGAAATGCTGTTTCCTTTTCCCACCATTTTGCCTTCGGTTCAGGATGATCTTCCTGTGTCAGAGCTCTTGCCTTTCCAAAGAAACAGCACTCTTCCTTCAAAAGTTCTTCACTGGATGCAAAATGTTGACCTAAGAACGACTCCACTGCCTCTGGTTATTATGCAGTACTGTCTAACCGCCTACATTCAGAAACAGGTAGATTATATTGGAGTGAATATGTTGTTAAAGTTGATGAATGAATGGAGGTTGATGGATGAGCTTGCAGTGCTGCGAGCTATATACTTGTTAGGTTCAGGTGATTTGCTACAACACTTTTCAACTGTAATTTTCGATAAGTTGGATAAGGGTGAAACATGGGATGATGATTTTGAGTTAAACACAATATTACAGGAATCAATCAGAAATTCTGCTGATTGTATGCTGTTAAGTGCTCCAGATTCATTGGTAGTCTCGATAACCAAAAATATTGTTGAGAGTGATGAGGAAGCTAGCACAAGTGGTTCTGTTTTGGGTACTCCTCGTAAAAGTCATGTCAATAACTTCGGAATTAACGGCCTTGATATGCTAAAATTCACATATAAGGTACCTTGGCCTCTTGAACTCATTGCAAACACAGAGGCAATTAAGAAGTACAACCAGGTTATGCGGTTTTTGCTGAAGGTCAAGCGTGCAAAATTTGTATTAGATAAAGTGCGGAGGTGGATGTGGAAGGGTAGGGGATCTACAACAAATAACAGAAAACATCATTGGTTAGTGGAGCAGAAACTCCTTCATTTTGTGGATGCTTTTCACCAATATGTGATGGACCGGGTATATCACAGTGCATGGCGTGAACTATGTGAAGGTATGTCTGTGGCCAAATCTCTGGATGAGGTCATTGAAGCCCACGAGGCTTACATGTTGTCGATACAGCGGCAGTGCTTTGTGGTTCCCGATAAACTGGGAGCTTTGATTGCCAGTCGCGTTAATATCATCCTTGGTTTAGCTTTAGACTTCTATACCATACAACAGACATTAAAAAGTGGCGGAGCTGTTTCTGCAATCAAGGCAAGGTGTGAGATGGAAGTCGACCGGATAGAGAAACAGTTTGATGATTGCATTGCTTTCTTACTTAGGGTCTTATCTTTCAAACTAAATGTAGGGCATTTCCCTCATTTGGCTGATCTGGTCACTAGAATTAACTACAACTATTACTATATGTCTGCTAATGGAAATTTAATGACCACCTCTGGCCCTGGAAGTGTTACTTCACGATTGGGGAAAGCCTCTGGGTAA 2997 0.3994 MGAEAQHSRSLIHKIYAPLSNEFPFATPLPSLRTNELELVRSVLRMLQGFSSSLFSWDHIENRFRVKNGVYVTHLSLKSLHSLLNQFIHAATCLQIVEITIKKIEIAVPRPPPTLKAFVTSASEWLQRLRNIALKEEVSTGNVDGISTPTLLGFKNSLSSLCSGAEFLLRIVHEAIPDVYFEFGASVPAADLAVHVLDYLHKKLEEMCLVQGGEEEAYLMVLYMYVGSLLPYIEGLDSWLFDGILDDPSDEMFFFANKEVSVAEADFWEKSYLIKKLQHGKLDTELSSTNYAGMPASNKKKEMGMRDSISSSSTIQGKEQSIRDCPACPLFIKDLAKSIVSAGKSLQLMRHVPTSLAVRSKRSNFKFERTQSLNYGLSPSHRVAGLTLSEIFSVSLAGLIGHGDHVCKYFWQDDWHESVSVSLFASYLNRYAEKTDNENLTASPHSEKIWYKFLIDTLFQKGSVDLKPKYENDGNGDSTGDKVVNEESFALRSCLQNPVITVSRKTIGNNGDALKTLNLSQNFCLPSLNDAGLRKAIFGAESTSFSDSEGTNYSFGFQYDESKYLHSHDTMKLLEMLFPFPTILPSVQDDLPVSELLPFQRNSTLPSKVLHWMQNVDLRTTPLPLVIMQYCLTAYIQKQVDYIGVNMLLKLMNEWRLMDELAVLRAIYLLGSGDLLQHFSTVIFDKLDKGETWDDDFELNTILQESIRNSADCMLLSAPDSLVVSITKNIVESDEEASTSGSVLGTPRKSHVNNFGINGLDMLKFTYKVPWPLELIANTEAIKKYNQVMRFLLKVKRAKFVLDKVRRWMWKGRGSTTNNRKHHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMSVAKSLDEVIEAHEAYMLSIQRQCFVVPDKLGALIASRVNIILGLALDFYTIQQTLKSGGAVSAIKARCEMEVDRIEKQFDDCIAFLLRVLSFKLNVGHFPHLADLVTRINYNYYYMSANGNLMTTSGPGSVTSRLGKASG 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04483 998 FunFam Gamma-tubulin complex component 657 972 - -
Trre5g04483 998 Pfam Gamma tubulin complex component N-terminal 40 395 IPR041470 -
Trre5g04483 998 Pfam Gamma tubulin complex component C-terminal 657 973 IPR040457 GO:0043015
Trre5g04483 998 Gene3D - 657 972 IPR042241 -
Trre5g04483 998 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 31 973 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04483 Trre-Chr5 46901819 46910601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04483 30 704 Glycosyltransferase AT1G20570 48.410 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04483 K16572 - gmx:100782299 1562.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04483 5 46901819 46910601 Trre5g04483 5 46901819 46910601 ECH