Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04480 ATGTATAAACATATGTCTAGAATTTTCATACAAGGATTTATCTTCCTTGTGATTGCTTCACTTGCAGCAGCAGGGTCAGGAAACAAGGCTAGAGCCAGAAGAACCATCTTGGTTGGAGACTCTCACGGTTGGCGTTCCGGCACTAACTACACTCAATGGGCCACAAAAAATAGTCCCTTCCGCGTCAATGACACATTGGTGTTCAAGTATCCCCCAAAGGGAAATTCCAAGGTTGTTCCTAGAGTTTATTTACTACCAAACATGTGGAGCTACATGACATGTGAATTTAGAGGAGCAAAGTTAATTGGAAGTGCAGTTCAAGGTGCTGGTGAAGGCTTAAAGATTGAGCTGAATGAGTTGAAACCTTACTACTTTGCCTCTGATGAAGGCAATGCCTATGATTGTATTGCTGGACTGACTAAGTTCATTGCAGTTCCATCTACACGTTCATTTTAA 456 0.4189 MYKHMSRIFIQGFIFLVIASLAAAGSGNKARARRTILVGDSHGWRSGTNYTQWATKNSPFRVNDTLVFKYPPKGNSKVVPRVYLLPNMWSYMTCEFRGAKLIGSAVQGAGEGLKIELNELKPYYFASDEGNAYDCIAGLTKFIAVPSTRSF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04480 151 ProSiteProfiles Phytocyanin domain profile. 34 148 IPR003245 GO:0009055
Trre5g04480 151 PANTHER GLYCINE-RICH PROTEIN-LIKE 28 150 - -
Trre5g04480 151 SUPERFAMILY Cupredoxins 35 145 IPR008972 -
Trre5g04480 151 Pfam Plastocyanin-like domain 44 130 IPR003245 GO:0009055
Trre5g04480 151 Gene3D - 32 147 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04480 Trre-Chr5 46893507 46894126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04480 35 95 Miscellaneous Gene Families AT3G60270 42.623 3.44e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04480 - - vra:106760467 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04480 5 46893507 46894126 Trre5g04480 5 46893507 46894126 ECH