Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04478 ATGCCATCTGTGCATTCTAGTCCATGCTACCCAATGGAAAATCCAGCAATAGCATCACTTCTCCGCCACACAACGGGCGAAAAGCGGAACAAATTCTCGGCCGGTGGGCTCTTAAAGATGTTCAAGCTCTTCCCTATGTTAACCTCAGGTTGCAAAATGGTAGCACTATTAGGTAGACCAAGAAAGCCTATGTTAAAAGATAGTGCGACAACCGGAACAATCTTCGGTTATCGAAAAGGTAGAGTAAGCATAGCAATACAAGAAGACACTCGACAAATGCCGGTTTTTCTCATAGAATTACCAATGCTAACAAGTGCTTTAAATAAAGAAATGTCGTCCGATATAGTTAGAATCGCGTTGGAGAGCGAGACGAAGACGAATAAGAAGAAATTGTTGGAAGAGTTTGTTTGGGCTGTTTATTGTAATGGAAAAAAAGTTGGGTATTCAATTAGAAGGAAACAAATGGGTGATGAAGAACTTCAAGTTATGCAACATTTGAGAGGTGTGTCCATGGGAGCTGGGGTGTTACCTACCGCATCTGATCATAAGGAATATTCTGATGGCGAAATGACTTATATGAGAGCAAGGTTTGAAAGAGTTATTGGTTCTAAAGATTCTGAAGCTTATTATATGATTAATCCTGATAATAATAATATTAATAATGGTGCTCAAGGACCTGAATTTAGTATCTTTTTTGTTAGAGCTCACTAG 711 0.391 MPSVHSSPCYPMENPAIASLLRHTTGEKRNKFSAGGLLKMFKLFPMLTSGCKMVALLGRPRKPMLKDSATTGTIFGYRKGRVSIAIQEDTRQMPVFLIELPMLTSALNKEMSSDIVRIALESETKTNKKKLLEEFVWAVYCNGKKVGYSIRRKQMGDEELQVMQHLRGVSMGAGVLPTASDHKEYSDGEMTYMRARFERVIGSKDSEAYYMINPDNNNINNGAQGPEFSIFFVRAH 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04478 236 Pfam Protein of unknown function, DUF617 71 234 IPR006460 GO:0010274
Trre5g04478 236 NCBIfam uncharacterized plant-specific domain TIGR01570 70 234 IPR006460 GO:0010274
Trre5g04478 236 PANTHER PROTEIN MIZU-KUSSEI 1 28 234 IPR006460 GO:0010274
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04478 Trre-Chr5 46846250 46846960 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04478 - - mtr:11420891 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04478 5 46846250 46846960 Trre5g04478 5 46846250 46846960 ECH